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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286517 (86 seq.)
>W1712082009
NHOS01000001
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
617847
617773
-
Ala
TGC
[ENA]
¡û
>WENV180096660
MTBK01141655
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
597
523
-
Ala
TGC
[ENA]
¢þ
>WENV180098983
MTBK01280133
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
17388
17462
+
Ala
TGC
[ENA]
¢þ
>WENV180242586
OBDI01306201
[OBDI] metagenome; diffuse fluid
102
28
-
Ala
TGC
[ENA]
¢þ
>W141022702
AJUM01000034
Bacteroidota
Alkaliflexus imshenetskii DSM 15055 [AJUM]
495279
495205
-
Ala
TGC
[ENA]
¡û
>W141022710
AJUM01000038
Bacteroidota
Alkaliflexus imshenetskii DSM 15055 [AJUM]
19
93
+
Ala
TGC
[ENA]
¡û
>WENV180705424
ODEJ01004392
[ODEJ] human metagenome; G_DNA_Tongue dorsum
2357
2431
+
Ala
TGC
[ENA]
¢þ
>WENV180717743
ODGE01001244
[ODGE] human metagenome; G_DNA_Buccal mucosa
2113
2187
+
Ala
TGC
[ENA]
¢þ
>WENV180718664
ODGG01049548
[ODGG] human metagenome; G_DNA_Buccal mucosa
181
255
+
Ala
TGC
[ENA]
¢þ
>WENV180736122
ODHB01005816
[ODHB] human metagenome; G_DNA_Supragingival plaque
1294
1220
-
Ala
TGC
[ENA]
¢þ
>WENV180740895
ODHF01025528
[ODHF] human metagenome; G_DNA_Buccal mucosa
94
168
+
Ala
TGC
[ENA]
¢þ
>WENV180746133
ODHM01008085
[ODHM] human metagenome; G_DNA_Buccal mucosa
102
176
+
Ala
TGC
[ENA]
¢þ
>WENV180751486
ODHS01058275
[ODHS] human metagenome; G_DNA_Supragingival plaque
622
548
-
Ala
TGC
[ENA]
¢þ
>WENV180773122
ODII01011449
[ODII] human metagenome; G_DNA_Buccal mucosa
159
85
-
Ala
TGC
[ENA]
¢þ
>WENV180774231
ODIJ01013174
[ODIJ] human metagenome; G_DNA_Tongue dorsum
308
382
+
Ala
TGC
[ENA]
¢þ
>WENV180775858
ODIK01005777
[ODIK] human metagenome; G_DNA_Tongue dorsum
1001
1075
+
Ala
TGC
[ENA]
¢þ
>WENV180788155
ODIS01035108
[ODIS] human metagenome; G_DNA_Supragingival plaque
223
297
+
Ala
TGC
[ENA]
¢þ
>WENV180790304
ODIT01008021
[ODIT] human metagenome; G_DNA_Tongue dorsum
1931
2005
+
Ala
TGC
[ENA]
¢þ
>WENV180791717
ODIV01002905
[ODIV] human metagenome; G_DNA_Buccal mucosa
389
463
+
Ala
TGC
[ENA]
¢þ
>WENV180809553
ODJK01024241
[ODJK] human metagenome; G_DNA_Subgingival plaque
1087
1013
-
Ala
TGC
[ENA]
¢þ
>WENV180816609
ODJP01030210
[ODJP] human metagenome; G_DNA_Tongue dorsum
278
352
+
Ala
TGC
[ENA]
¢þ
>WENV180830609
ODKB01007087
[ODKB] human metagenome; G_DNA_Tongue dorsum
2012
1938
-
Ala
TGC
[ENA]
¢þ
>WENV180834203
ODKD01006270
[ODKD] human metagenome; G_DNA_Supragingival plaque
433
507
+
Ala
TGC
[ENA]
¢þ
>WENV180858363
ODLC01004153
[ODLC] human metagenome; G_DNA_Tongue dorsum
2012
1938
-
Ala
TGC
[ENA]
¢þ
>WENV180913276
ODST01000625
[ODST] human metagenome; G_DNA_Attached/Keratinized gingiva
2325
2399
+
Ala
TGC
[ENA]
¢þ
>WENV180917262
ODTD01009546
[ODTD] human metagenome; G_DNA_Tongue dorsum
293
367
+
Ala
TGC
[ENA]
¢þ
>WENV180934002
ODTR01010765
[ODTR] human metagenome; G_DNA_Supragingival plaque
597
523
-
Ala
TGC
[ENA]
¢þ
>WENV180935005
ODTS01020235
[ODTS] human metagenome; G_DNA_Subgingival plaque
244
318
+
Ala
TGC
[ENA]
¢þ
>WENV180946274
ODUD01024756
[ODUD] human metagenome; G_DNA_Tongue dorsum
274
348
+
Ala
TGC
[ENA]
¢þ
>WENV180958529
ODUL01007568
[ODUL] human metagenome; G_DNA_Supragingival plaque
275
349
+
Ala
TGC
[ENA]
¢þ
>WENV180974681
ODUX01048741
[ODUX] human metagenome; G_DNA_Buccal mucosa
240
166
-
Ala
TGC
[ENA]
¢þ
>WENV180987199
ODVK01007923
[ODVK] human metagenome; G_DNA_Supragingival plaque
1940
2014
+
Ala
TGC
[ENA]
¢þ
>WENV180990986
ODVN01011160
[ODVN] human metagenome; G_DNA_Tongue dorsum
294
368
+
Ala
TGC
[ENA]
¢þ
>WENV181007143
ODWD01003603
[ODWD] human metagenome; G_DNA_Buccal mucosa
234
160
-
Ala
TGC
[ENA]
¢þ
>WENV181042705
ODXU01004328
[ODXU] human metagenome; G_DNA_Buccal mucosa
1004
930
-
Ala
TGC
[ENA]
¢þ
>WENV181046731
ODXX01001816
[ODXX] human metagenome; G_DNA_Buccal mucosa
2017
1943
-
Ala
TGC
[ENA]
¢þ
>WENV181069335
ODZZ01032410
[ODZZ] human metagenome; G_DNA_Tongue dorsum
190
264
+
Ala
TGC
[ENA]
¢þ
>WENV181074769
OEAO01025957
[OEAO] human metagenome; G_DNA_Tongue dorsum
270
344
+
Ala
TGC
[ENA]
¢þ
>WENV181096099
OEBY01050968
[OEBY] human metagenome; G_DNA_Tongue dorsum
435
361
-
Ala
TGC
[ENA]
¢þ
>WENV181102824
OECT01011169
[OECT] human metagenome; G_DNA_Tongue dorsum
407
481
+
Ala
TGC
[ENA]
¢þ
>WENV181108301
OEEJ01000004
[OEEJ] human metagenome; G_DNA_Tongue dorsum
2012
1938
-
Ala
TGC
[ENA]
¢þ
>WENV181113094
OEEL01011243
[OEEL] human metagenome; G_DNA_Tongue dorsum
408
482
+
Ala
TGC
[ENA]
¢þ
>WENV181141840
OEGT01026846
[OEGT] human metagenome; G_DNA_Throat
282
356
+
Ala
TGC
[ENA]
¢þ
>WENV181156240
OEIE01006514
[OEIE] human metagenome; G_DNA_Supragingival plaque
408
482
+
Ala
TGC
[ENA]
¢þ
>WENV181178537
OEJT01000049
[OEJT] human metagenome; G_DNA_Supragingival plaque
113361
113435
+
Ala
TGC
[ENA]
¢þ
>WENV183711049
PDWI01059986
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2291
2365
+
Ala
TGC
[ENA]
¢þ
>WENV183713312
PDWI01133621
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1208
1134
-
Ala
TGC
[ENA]
¢þ
>WENV183720290
PDWJ01030975
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2283
2357
+
Ala
TGC
[ENA]
¢þ
>WENV183720521
PDWJ01036187
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2532
2458
-
Ala
TGC
[ENA]
¢þ
>WENV183747658
PPCM01014444
[PPCM] marine sediment metagenome; marine sediment
974
900
-
Ala
TGC
[ENA]
¢þ
>WENV170005979
AMQJ01008898
[AMQJ] sediment metagenome; subsurface aquifer sediment
608
532
-
Ala
TGC
[ENA]
¢þ
>WENV170656561
JTFO01025164
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
79
153
+
Ala
TGC
[ENA]
¢þ
>WENV170697336
LGVF01117386
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1030
954
-
Ala
TGC
[ENA]
¢þ
>C191120459
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
2729037
2729111
+
Ala
TGC
-
¡û
>C191120479
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
1525528
1525454
-
Ala
TGC
-
¡û
>C191120481
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
1519080
1519006
-
Ala
TGC
-
¡û
>C191120483
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
1512632
1512558
-
Ala
TGC
-
¡û
>C191132750
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
1754106
1754180
+
Ala
TGC
-
¡û
>C191132752
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
1946671
1946745
+
Ala
TGC
-
¡û
>C191132772
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
784074
784000
-
Ala
TGC
-
¡û
>C191156050
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
1510472
1510546
+
Ala
TGC
-
¡û
>C191156080
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
614411
614337
-
Ala
TGC
-
¡û
>C191156082
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
607099
607025
-
Ala
TGC
-
¡û
>C191156086
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
339702
339628
-
Ala
TGC
-
¡û
>C191211145
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
2952230
2952304
+
Ala
TGC
-
¡û
>C191211155
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
1991499
1991425
-
Ala
TGC
-
¡û
>C191211157
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
1983681
1983607
-
Ala
TGC
-
¡û
>C191212996
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
1838994
1838920
-
Ala
TGC
-
¡û
>C191213001
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
1442575
1442501
-
Ala
TGC
-
¡û
>W141802049
JPEP01000002
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
949398
949474
+
Ala
TGC
[ENA]
¡û
>W1810071730
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
1206860
1206934
+
Ala
TGC
[ENA]
¡û
>W1810071732
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
1214793
1214867
+
Ala
TGC
[ENA]
¡û
>W1810071765
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
5296266
5296192
-
Ala
TGC
[ENA]
¡û
>W1810071767
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
5288332
5288258
-
Ala
TGC
[ENA]
¡û
>W1810071796
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
19625
19551
-
Ala
TGC
[ENA]
¡û
>W1810071798
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
12225
12151
-
Ala
TGC
[ENA]
¡û
>W1810071800
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
4854
4780
-
Ala
TGC
[ENA]
¡û
>W1810282735
PSZM01000024
Bacteroidota
Apibacter adventoris wkB301 [PSZM]
1901
1975
+
Ala
TGC
[ENA]
¡û
>W1810282740
PSZM01000025
Bacteroidota
Apibacter adventoris wkB301 [PSZM]
2977
2903
-
Ala
TGC
[ENA]
¡û
>SRA1032507
SRR035088.30745
454 Sequencing (SRP001809)
442
366
-
Ala
TGC
[SRA]
>W1511390842
JSYK01000002
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
3147
3071
-
Ala
TGC
[ENA]
¡û
>W1511390877
JSYL01000002
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
390019
389943
-
Ala
TGC
[ENA]
¡û
>W1710554968
FOIX01000005
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
2435
2511
+
Ala
TGC
[ENA]
¡û
>W1710554970
FOIX01000005
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
10253
10329
+
Ala
TGC
[ENA]
¡û
>W1710557466
FOLA01000026
Bacteroidota
Kaistella jeonii [FOLA]
2337
2413
+
Ala
TGC
[ENA]
¡û
>W1710565963
FORQ01000006
Bacteroidota
Kaistella treverensis treverense [FORQ]
2294
2370
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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