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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287037 (26 seq.)
>W1711666802
MRCI01000001
Gammaproteobacteria
Neptunomonas phycophila [MRCI]
1424675
1424750
+
His
GTG
[ENA]
¡û
>W1711666882
MRCJ01000008
Gammaproteobacteria
Neptunomonas phycophila [MRCJ]
78942
78867
-
His
GTG
[ENA]
¡û
>C171092417
CP019343
Gammaproteobacteria
Oceanicoccus sagamiensis NBRC 107125 [CP019343]
4163575
4163650
+
His
GTG
-
¡û
>WENV180106253
OAPE01053828
[OAPE] marine metagenome; Sterivex cartridges
131
56
-
His
GTG
[ENA]
¢þ
>WENV180362697
OBNX01021239
[OBNX] marine metagenome; ENVO:00002010
505
580
+
His
GTG
[ENA]
¢þ
>WENV180383387
OBOU01059017
[OBOU] marine metagenome; ENV:00002010
296
221
-
His
GTG
[ENA]
¢þ
>WENV180383890
OBOV01061438
[OBOV] marine metagenome; ENV:00002010
201
276
+
His
GTG
[ENA]
¢þ
>WENV180386082
OBPB01031636
[OBPB] marine metagenome; Sterile flask
319
394
+
His
GTG
[ENA]
¢þ
>WENV170304605
CESI01061094
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
507
432
-
His
GTG
[ENA]
¢þ
>WENV170401737
CEUE01268415
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
225
150
-
His
GTG
[ENA]
¢þ
>WENV170797345
MDSV01178863
[MDSV] marine metagenome; seawater
4572
4497
-
His
GTG
[ENA]
¢þ
>WENV170826952
MDSY01119947
[MDSY] marine metagenome; seawater
6234
6159
-
His
GTG
[ENA]
¢þ
>WENV170861578
MDTB01066476
[MDTB] marine metagenome; seawater
230
305
+
His
GTG
[ENA]
¢þ
>W1910270397
FQLF01000007
Gammaproteobacteria
Oceanicoccus sp. KOV_DT_Chl [FQLF]
228855
228930
+
His
GTG
[ENA]
¡û
>C161091160
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
2584421
2584496
+
His
GTG
[Ensembl]
¡û
>C161091162
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
2584616
2584691
+
His
GTG
[Ensembl]
¡û
>C161091163
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
2584826
2584901
+
His
GTG
[Ensembl]
¡û
>C161091164
CP015839
Gammaproteobacteria
Marinobacterium aestuarii ST58-10 [CP015839]
2585007
2585082
+
His
GTG
[Ensembl]
¡û
>W1610062706
BCNS01000143
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
1644
1719
+
His
GTG
[ENA]
¡û
>W1610062708
BCNS01000143
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
1839
1914
+
His
GTG
[ENA]
¡û
>W1610062709
BCNS01000143
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
2050
2125
+
His
GTG
[ENA]
¡û
>W1610062710
BCNS01000143
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
2236
2311
+
His
GTG
[ENA]
¡û
>W1710060182
BCNS01000143
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
1644
1719
+
His
GTG
[ENA]
¡û
>W1710060184
BCNS01000143
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
1839
1914
+
His
GTG
[ENA]
¡û
>W1710060185
BCNS01000143
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
2050
2125
+
His
GTG
[ENA]
¡û
>W1710060186
BCNS01000143
Gammaproteobacteria
Marinobacterium profundum PAMC 27536 [BCNS]
2236
2311
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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