This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287308 (11 seq.)
>W1711503591
MKTT01000061
Planctomycetota
Planctomycetales bacterium 71-10 [MKTT]
91360
91433
+
Asn
GTT
[ENA]
¡û
>W1711503592
MKTT01000061
Planctomycetota
Planctomycetales bacterium 71-10 [MKTT]
91519
91592
+
Asn
GTT
[ENA]
¡û
>C171089126
CP019082
Planctomycetota
Paludisphaera borealis PX4 [CP019082]
1386151
1386078
-
Asn
GTT
-
¡û
>C171089127
CP019082
Planctomycetota
Paludisphaera borealis PX4 [CP019082]
1385807
1385734
-
Asn
GTT
-
¡û
>w027440
ABCE01000020
Planctomycetota
Gimesia maris DSM 8797 [ABCE]
107648
107723
+
Asn
GTT
[ENA]
¡û
>WENV170121103
CENL01050529
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
148753
148680
-
Asn
GTT
[ENA]
¢þ
>WENV170661586
JXWV01064628
[JXWV] soil metagenome; rice field; organic FYM Plot
383
456
+
Asn
GTT
[ENA]
¢þ
>WENV170668164
LADL02001546
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
2946
2873
-
Asn
GTT
[ENA]
¢þ
>C11111484
CP002353
Planctomycetota
Isosphaera pallida ATCC 43644 [CP002353]
3561885
3561812
-
Asn
GTT
[Ensembl]
¡û
>C161033447
CP011273
Planctomycetota
Planctomyces sp. SH-PL62 [CP011273]
4552328
4552255
-
Asn
GTT
-
¡û
>C161033448
CP011273
Planctomycetota
Planctomyces sp. SH-PL62 [CP011273]
4552151
4552078
-
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK