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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287316 (38 seq.)
>C171127289
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
524546
524621
+
Val
TAC
-
¡û
>C171127325
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
209224
209149
-
Val
TAC
-
¡û
>C171127344
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
632523
632598
+
Val
TAC
-
¡û
>C171127378
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
256055
255980
-
Val
TAC
-
¡û
>C171127416
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
780
705
-
Val
TAC
-
¡û
>C026070
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
637035
636960
-
Val
TAC
[Ensembl]
¡û
>w025434
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
421578
421655
+
Val
TAC
[ENA]
¡û
>w025408
AAZS01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
266505
266428
-
Val
TAC
[ENA]
¡û
>w025383
AAZR01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
69962
69885
-
Val
TAC
[ENA]
¡û
>w025353
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
266122
266199
+
Val
TAC
[ENA]
¡û
>w024353
AAYQ01000013
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
11409
11332
-
Val
TAC
[ENA]
¡û
>w024308
AAYP01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
240189
240112
-
Val
TAC
[ENA]
¡û
>w024280
AAYO01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
129297
129374
+
Val
TAC
[ENA]
¡û
>w024253
AAYN01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
33715
33638
-
Val
TAC
[ENA]
¡û
>w024224
AAYM01000001
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
183855
183778
-
Val
TAC
[ENA]
¡û
>WENV180225654
OBBO01000003
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
153779
153854
+
Val
TAC
[ENA]
¢þ
>WENV180554111
OCJM01000313
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
285
210
-
Val
TAC
[ENA]
¢þ
>WENV180717321
ODGC01005981
[ODGC] human metagenome; G_DNA_Vaginal introitus
215
140
-
Val
TAC
[ENA]
¢þ
>WENV180822765
ODJV01000875
[ODJV] human metagenome; G_DNA_Posterior fornix
1109
1034
-
Val
TAC
[ENA]
¢þ
>W08002223
ABER01000001
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
213997
213925
-
Val
TAC
[ENA]
¡û
>W08002258
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
209775
209703
-
Val
TAC
[ENA]
¡û
>W08002276
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
601376
601451
+
Val
TAC
[ENA]
¡û
>W08002303
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
498045
498120
+
Val
TAC
[ENA]
¡û
>W08002807
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
590079
590154
+
Val
TAC
[ENA]
¡û
>C08011095
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
637021
636949
-
Val
TAC
[Ensembl]
¡û
>C191003515
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
459988
459913
-
Val
TAC
-
¡û
>C09110780
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
717697
717622
-
Val
TAC
[Ensembl]
¡û
>W1911824668
QZWO01000066
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
310
385
+
Val
TAC
[ENA]
¡û
>W1810735668
QOKT01000027
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
54152
54077
-
Val
TAC
[ENA]
¡û
>W1810735701
QOKU01000123
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
3070
2995
-
Val
TAC
[ENA]
¡û
>W1810757251
QPHI01000088
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
5566
5491
-
Val
TAC
[ENA]
¡û
>W1810757278
QPHJ01000096
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
2950
2875
-
Val
TAC
[ENA]
¡û
>W1810757302
QPHK01000136
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
4363
4288
-
Val
TAC
[ENA]
¡û
>C151002378
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
285853
285928
+
Val
TAC
[Ensembl]
¡û
>W121060651
AJFX01000009
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
90951
90876
-
Val
TAC
[ENA]
¡û
>W121060682
AJFY01000009
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
116949
116874
-
Val
TAC
[ENA]
¡û
>W121060706
AJFZ01000005
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
113072
112997
-
Val
TAC
[ENA]
¡û
>W121060733
AJGA01000011
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
113154
113079
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK