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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287317 (37 seq.)
>C171127302
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
546054
546129
+
Phe
GAA
-
¡û
>C171127338
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
187719
187644
-
Phe
GAA
-
¡û
>C171127356
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
654047
654122
+
Phe
GAA
-
¡û
>C171127391
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
234533
234458
-
Phe
GAA
-
¡û
>C171127411
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
706442
706367
-
Phe
GAA
-
¡û
>C026083
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
615520
615445
-
Phe
GAA
[Ensembl]
¡û
>w025447
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
444897
444974
+
Phe
GAA
[ENA]
¡û
>w025421
AAZS01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
243187
243110
-
Phe
GAA
[ENA]
¡û
>w025396
AAZR01000003
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
46643
46566
-
Phe
GAA
[ENA]
¡û
>w025366
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
287640
287717
+
Phe
GAA
[ENA]
¡û
>w024351
AAYQ01000011
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
27558
27481
-
Phe
GAA
[ENA]
¡û
>w024321
AAYP01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
216870
216793
-
Phe
GAA
[ENA]
¡û
>w024293
AAYO01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
152616
152693
+
Phe
GAA
[ENA]
¡û
>w024266
AAYN01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
10396
10319
-
Phe
GAA
[ENA]
¡û
>w024237
AAYM01000001
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
162340
162263
-
Phe
GAA
[ENA]
¡û
>WENV180225667
OBBO01000003
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
175294
175369
+
Phe
GAA
[ENA]
¢þ
>WENV180554137
OCJM01005254
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
161
86
-
Phe
GAA
[ENA]
¢þ
>W08002236
ABER01000001
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
192479
192407
-
Phe
GAA
[ENA]
¡û
>W08002271
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
188270
188198
-
Phe
GAA
[ENA]
¡û
>W08002289
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
624695
624770
+
Phe
GAA
[ENA]
¡û
>W08002316
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
521371
521446
+
Phe
GAA
[ENA]
¡û
>W08002820
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
613398
613473
+
Phe
GAA
[ENA]
¡û
>C08011108
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
615506
615434
-
Phe
GAA
[Ensembl]
¡û
>C191003528
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
438482
438407
-
Phe
GAA
-
¡û
>W141779626
JONZ01000005
Mycoplasmatota
Ureaplasma canigenitalium ATCC 51252 [JONZ]
4292
4217
-
Phe
GAA
[ENA]
¡û
>C09110793
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
694378
694303
-
Phe
GAA
[Ensembl]
¡û
>W1911824666
QZWO01000052
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
395
320
-
Phe
GAA
[ENA]
¡û
>W1810735681
QOKT01000027
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
30833
30758
-
Phe
GAA
[ENA]
¡û
>W1810735698
QOKU01000119
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
481
406
-
Phe
GAA
[ENA]
¡û
>W1810757249
QPHI01000084
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
395
320
-
Phe
GAA
[ENA]
¡û
>W1810757275
QPHJ01000090
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
203
128
-
Phe
GAA
[ENA]
¡û
>W1810757300
QPHK01000132
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
689
614
-
Phe
GAA
[ENA]
¡û
>C151002391
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
307375
307450
+
Phe
GAA
[Ensembl]
¡û
>W121060664
AJFX01000009
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
67632
67557
-
Phe
GAA
[ENA]
¡û
>W121060695
AJFY01000009
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
93629
93554
-
Phe
GAA
[ENA]
¡û
>W121060719
AJFZ01000005
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
89753
89678
-
Phe
GAA
[ENA]
¡û
>W121060746
AJGA01000011
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
89814
89739
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK