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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287331 (62 seq.)
>W131249953
CAUE01000084
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
7043
6968
-
Lys
CTT
[ENA]
¡û
>W131251112
CAVF010000009
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [CAVF]
47662
47737
+
Lys
CTT
[ENA]
¡û
>C171071267
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
628385
628460
+
Lys
CTT
-
¡û
>C171073885
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
1493265
1493190
-
Lys
CTT
-
¡û
>C171110897
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
628379
628454
+
Lys
CTT
-
¡û
>C171127844
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
654507
654582
+
Lys
CTT
-
¡û
>C005215
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
654377
654452
+
Lys
CTT
[Ensembl]
¡û
>w024144
AAYJ01000004
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
49537
49612
+
Lys
CTT
[ENA]
¡û
>w020074
AAUP01000007
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
17752
17680
-
Lys
CTT
[ENA]
¡û
>w016749
AAQO01000003
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
24256
24184
-
Lys
CTT
[ENA]
¡û
>w016618
AAQI01000002
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
272668
272596
-
Lys
CTT
[ENA]
¡û
>W141027239
AKYP01000127
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
1789
1714
-
Lys
CTT
[ENA]
¡û
>C08003000
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
703129
703204
+
Lys
CTT
[Ensembl]
¡û
>C08003046
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
735119
735194
+
Lys
CTT
[Ensembl]
¡û
>W141254764
CBTH010000003
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
318113
318188
+
Lys
CTT
[ENA]
¡û
>W141260658
CCAH010000009
Gammaproteobacteria
Coxiella burnetii [CCAH]
47486
47561
+
Lys
CTT
[ENA]
¡û
>W141260700
CCAI010000009
Gammaproteobacteria
Coxiella burnetii [CCAI]
47486
47561
+
Lys
CTT
[ENA]
¡û
>W141260742
CCAJ010000019
Gammaproteobacteria
Coxiella burnetii [CCAJ]
15742
15817
+
Lys
CTT
[ENA]
¡û
>W141260796
CCAK010000123
Gammaproteobacteria
Coxiella burnetii [CCAK]
7331
7256
-
Lys
CTT
[ENA]
¡û
>W141260835
CCAL010000009
Gammaproteobacteria
Coxiella burnetii [CCAL]
47344
47419
+
Lys
CTT
[ENA]
¡û
>W141260877
CCAM010000026
Gammaproteobacteria
Coxiella burnetii [CCAM]
47342
47417
+
Lys
CTT
[ENA]
¡û
>W141267617
CCNR01000047
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
7134
7059
-
Lys
CTT
[ENA]
¡û
>WENV170765317
LWDU01037114
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
69292
69367
+
Lys
CTT
[ENA]
¢þ
>C191091540
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
1303184
1303256
+
Lys
CTT
-
¡û
>C191134918
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
913053
913125
+
Lys
CTT
-
¡û
>C191174654
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
628246
628318
+
Lys
CTT
-
¡û
>W141810549
JPVV01000047
Gammaproteobacteria
Coxiella burnetii [JPVV]
16471
16396
-
Lys
CTT
[ENA]
¡û
>C09102998
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
1256595
1256520
-
Lys
CTT
[Ensembl]
¡û
>C09103037
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
1493356
1493281
-
Lys
CTT
[Ensembl]
¡û
>W1911118951
NOLM01000012
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
47574
47646
+
Lys
CTT
[ENA]
¡û
>W1911118993
NOLN01000012
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
47573
47645
+
Lys
CTT
[ENA]
¡û
>W1911119042
NOLO01000006
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
47558
47630
+
Lys
CTT
[ENA]
¡û
>W1911119092
NOLP01000030
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
7219
7147
-
Lys
CTT
[ENA]
¡û
>W1911119126
NOLQ01000006
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
47558
47630
+
Lys
CTT
[ENA]
¡û
>W1911119168
NOLR01000009
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
47366
47438
+
Lys
CTT
[ENA]
¡û
>W1911119210
NOLS01000006
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
47558
47630
+
Lys
CTT
[ENA]
¡û
>W1911119252
NOLT01000006
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
47558
47630
+
Lys
CTT
[ENA]
¡û
>W1911119294
NOLU01000006
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
47558
47630
+
Lys
CTT
[ENA]
¡û
>W1911119336
NOLV01000006
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
47558
47630
+
Lys
CTT
[ENA]
¡û
>W1911136635
NOVF01000006
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
47559
47631
+
Lys
CTT
[ENA]
¡û
>W1911136677
NOVG01000007
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
15920
15992
+
Lys
CTT
[ENA]
¡û
>W1911136719
NOVH01000006
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
47558
47630
+
Lys
CTT
[ENA]
¡û
>W1911136761
NOVI01000015
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
47543
47615
+
Lys
CTT
[ENA]
¡û
>W1911136803
NOVJ01000006
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
47558
47630
+
Lys
CTT
[ENA]
¡û
>W1911136845
NOVK01000006
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
47558
47630
+
Lys
CTT
[ENA]
¡û
>W1911244439
NSHJ01000052
Gammaproteobacteria
Coxiella-like endosymbiont [NSHJ]
339
265
-
Lys
CTT
[ENA]
¡û
>W1810059843
PDLP01000008
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
7240
7168
-
Lys
CTT
[ENA]
¡û
>W1810235694
PPFM01000011
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
7159
7087
-
Lys
CTT
[ENA]
¡û
>W1810235734
PPFN01000011
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
7159
7087
-
Lys
CTT
[ENA]
¡û
>W1810235778
PPFO01000011
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
7159
7087
-
Lys
CTT
[ENA]
¡û
>W1810235795
PPFP01000005
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
7163
7091
-
Lys
CTT
[ENA]
¡û
>W1810235862
PPFQ01000011
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
7159
7087
-
Lys
CTT
[ENA]
¡û
>C151077686
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
515617
515691
+
Lys
CTT
[Ensembl]
¡û
>C151077693
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
663096
663170
+
Lys
CTT
[Ensembl]
¡û
>C151102369
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
654389
654464
+
Lys
CTT
-
¡û
>W1510060758
CCXO01000003
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
912593
912518
-
Lys
CTT
[ENA]
¡û
>W1510061137
CCYB01000047
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
7134
7059
-
Lys
CTT
[ENA]
¡û
>W1510064622
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
695750
695825
+
Lys
CTT
[ENA]
¡û
>W1511555118
JZWL01000001
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
1070137
1070062
-
Lys
CTT
[ENA]
¡û
>C161017357
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
1497768
1497693
-
Lys
CTT
[Ensembl]
¡û
>C161059046
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
1303293
1303368
+
Lys
CTT
-
¡û
>C161071911
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
1221275
1221350
+
Lys
CTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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