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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287352 (15 seq.)
>W131211909
ATNM01000066
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
42553
42628
+
Lys
TTT
[ENA]
¡û
>W131211922
ATNM01000135
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
32379
32306
-
Lys
TTT
[ENA]
¡û
>W131165393
ARBN01000010
Bacteroidota
Cytophaga aurantiaca DSM 3654 [ARBN]
172539
172612
+
Lys
TTT
[ENA]
¡û
>W131165394
ARBN01000010
Bacteroidota
Cytophaga aurantiaca DSM 3654 [ARBN]
172847
172920
+
Lys
TTT
[ENA]
¡û
>C005854
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
3199809
3199737
-
Lys
TTT
[Ensembl]
¡û
>C005855
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
3198849
3198777
-
Lys
TTT
[Ensembl]
¡û
>WENV180021040
FTDL01000117
[FTDL] metagenome; soil
107
34
-
Lys
TTT
[ENA]
¢þ
>w002458
AABD03000011
Bacteroidota
Cytophaga hutchinsonii [AABD]
12015
11938
-
Lys
TTT
[ENA]
¡û
>w002457
AABD03000011
Bacteroidota
Cytophaga hutchinsonii [AABD]
12974
12899
-
Lys
TTT
[ENA]
¡û
>W1910237066
FPJX01000002
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
297832
297905
+
Lys
TTT
[ENA]
¡û
>W1910237067
FPJX01000002
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
298792
298865
+
Lys
TTT
[ENA]
¡û
>C151089999
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
292422
292497
+
Lys
TTT
[Ensembl]
¡û
>C151090004
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
2159951
2160024
+
Lys
TTT
[Ensembl]
¡û
>C11105704
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
361055
361130
+
Lys
TTT
[Ensembl]
¡û
>C11105709
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
2191898
2191971
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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