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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287363 (77 seq.)
>W1711078551
LSMZ01000052
Bacillota
Clostridium sp. link-BC1 [LSMZ]
34765
34840
+
Lys
CTT
[ENA]
¡û
>W1711088680
LSZB01000503
Bacillota
Clostridium haemolyticum [LSZB]
342
417
+
Lys
CTT
[ENA]
¡û
>W1711088688
LSZB01000503
Bacillota
Clostridium haemolyticum [LSZB]
1009
1084
+
Lys
CTT
[ENA]
¡û
>W1711090969
LTBB01000004
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
88748
88673
-
Lys
CTT
[ENA]
¡û
>W1711091032
LTBB01000026
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
328
403
+
Lys
CTT
[ENA]
¡û
>W1711091040
LTBB01000026
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
1012
1087
+
Lys
CTT
[ENA]
¡û
>W1711091051
LTBB01000032
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
137
212
+
Lys
CTT
[ENA]
¡û
>W1711091059
LTBB01000032
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
821
896
+
Lys
CTT
[ENA]
¡û
>W1711222522
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
1175991
1176066
+
Lys
CTT
[ENA]
¡û
>W1711774472
MVJC01000119
Bacillota
Clostridium botulinum D/C [MVJC]
3858
3933
+
Lys
CTT
[ENA]
¡û
>C006269
CP000382
Bacillota
Clostridium novyi NT [CP000382]
2100020
2099945
-
Lys
CTT
[Ensembl]
¡û
>C006277
CP000382
Bacillota
Clostridium novyi NT [CP000382]
2099347
2099272
-
Lys
CTT
[Ensembl]
¡û
>WENV180545524
OCIT01052885
[OCIT] human gut metagenome; human gut
14
89
+
Lys
CTT
[ENA]
¢þ
>W08001227
ABDQ01000002
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
291140
291215
+
Lys
CTT
[ENA]
¡û
>W08001235
ABDQ01000002
Bacillota
Clostridium botulinum C str. Eklund [ABDQ]
291809
291884
+
Lys
CTT
[ENA]
¡û
>WENV181683094
OGOU01070726
[OGOU] human gut metagenome; faeces
342
417
+
Lys
CTT
[ENA]
¢þ
>WENV183109203
OLNN01002774
[OLNN] human gut metagenome; faeces
11502
11427
-
Lys
CTT
[ENA]
¢þ
>WENV183129362
OLNZ01100120
[OLNZ] human gut metagenome; faeces
490
565
+
Lys
CTT
[ENA]
¢þ
>WENV183172527
OLPC01017292
[OLPC] human gut metagenome; faeces
334
409
+
Lys
CTT
[ENA]
¢þ
>WENV183205670
OLPZ01026788
[OLPZ] human gut metagenome; faeces
1184
1109
-
Lys
CTT
[ENA]
¢þ
>WENV183236966
OLQX01048471
[OLQX] human gut metagenome; faeces
330
405
+
Lys
CTT
[ENA]
¢þ
>WENV183262460
OLRQ01002141
[OLRQ] human gut metagenome; faeces
399
474
+
Lys
CTT
[ENA]
¢þ
>W141427408
JENK01000026
Bacillota
Clostridium novyi A str. NCTC 538 [JENK]
10574
10499
-
Lys
CTT
[ENA]
¡û
>W141427416
JENK01000026
Bacillota
Clostridium novyi A str. NCTC 538 [JENK]
9901
9826
-
Lys
CTT
[ENA]
¡û
>W141427482
JENL01000003
Bacillota
Clostridium novyi A str. 4540 [JENL]
47374
47299
-
Lys
CTT
[ENA]
¡û
>W141427490
JENL01000003
Bacillota
Clostridium novyi A str. 4540 [JENL]
46702
46627
-
Lys
CTT
[ENA]
¡û
>W141427758
JENP01000007
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
18594
18519
-
Lys
CTT
[ENA]
¡û
>W141427766
JENP01000007
Bacillota
Clostridium botulinum C/D str. BKT12695 [JENP]
17925
17850
-
Lys
CTT
[ENA]
¡û
>W141427912
JENR01000035
Bacillota
Clostridium botulinum D str. 16868 [JENR]
58614
58689
+
Lys
CTT
[ENA]
¡û
>W141427920
JENR01000035
Bacillota
Clostridium botulinum D str. 16868 [JENR]
59280
59355
+
Lys
CTT
[ENA]
¡û
>W141428002
JENS01000088
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
578
653
+
Lys
CTT
[ENA]
¡û
>W141428006
JENS01000088
Bacillota
Clostridium botulinum C/D str. BKT75002 [JENS]
916
991
+
Lys
CTT
[ENA]
¡û
>W141428047
JENT01000027
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
303
228
-
Lys
CTT
[ENA]
¡û
>W141428105
JENT01000123
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
64249
64174
-
Lys
CTT
[ENA]
¡û
>W141428109
JENT01000123
Bacillota
Clostridium botulinum C/D str. BKT2873 [JENT]
63911
63836
-
Lys
CTT
[ENA]
¡û
>W141428158
JENU01000032
Bacillota
Clostridium sp. K25 [JENU]
39334
39259
-
Lys
CTT
[ENA]
¡û
>W141428166
JENU01000032
Bacillota
Clostridium sp. K25 [JENU]
38667
38592
-
Lys
CTT
[ENA]
¡û
>W141428228
JENV01000006
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
206
281
+
Lys
CTT
[ENA]
¡û
>W141428236
JENV01000006
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
873
948
+
Lys
CTT
[ENA]
¡û
>W141428265
JENV01000026
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
56133
56208
+
Lys
CTT
[ENA]
¡û
>W141428338
JENW01000043
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
887
812
-
Lys
CTT
[ENA]
¡û
>W141428342
JENW01000043
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
548
473
-
Lys
CTT
[ENA]
¡û
>W141428348
JENW01000053
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
52649
52574
-
Lys
CTT
[ENA]
¡û
>W141428352
JENW01000053
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
52310
52235
-
Lys
CTT
[ENA]
¡û
>W141428371
JENW01000102
Bacillota
Clostridium novyi B str. ATCC 27606 [JENW]
321
246
-
Lys
CTT
[ENA]
¡û
>W141428463
JENX01000105
Bacillota
Clostridium haemolyticum NCTC 9693 [JENX]
474
549
+
Lys
CTT
[ENA]
¡û
>WENV170689769
LFRM01310693
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
260
335
+
Lys
CTT
[ENA]
¢þ
>C191063927
CP029458
Bacillota
Clostridium novyi 150557 [CP029458]
1207143
1207218
+
Lys
CTT
-
¡û
>W09134466
ACSJ01000001
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
295872
295947
+
Lys
CTT
[ENA]
¡û
>W09134474
ACSJ01000001
Bacillota
Clostridium botulinum D str. 1873 [ACSJ]
296539
296614
+
Lys
CTT
[ENA]
¡û
>W1910483287
FXLO01000008
Bacillota
Clostridium massiliodielmoense MT26 [FXLO]
365693
365768
+
Lys
CTT
[ENA]
¡û
>W1810367415
PVXN01000053
Bacillota
Clostridium thermopalmarium DSM 5974 [PVXN]
263814
263889
+
Lys
CTT
[ENA]
¡û
>C11104938
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
2352115
2352040
-
Lys
CTT
[Ensembl]
¡û
>C11104946
CP002410
Bacillota
Clostridium botulinum BKT015925 [CP002410]
2351449
2351374
-
Lys
CTT
[Ensembl]
¡û
>W1510882110
JDRX01000009
Bacillota
Clostridium novyi A str. 4570 [JDRX]
76
1
-
Lys
CTT
[ENA]
¡û
>W1510882161
JDRY01000027
Bacillota
Clostridium botulinum C/D str. DC5 [JDRY]
35258
35333
+
Lys
CTT
[ENA]
¡û
>W1510882169
JDRY01000027
Bacillota
Clostridium botulinum C/D str. DC5 [JDRY]
35924
35999
+
Lys
CTT
[ENA]
¡û
>W1510882269
JDRZ01000031
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
554
479
-
Lys
CTT
[ENA]
¡û
>W1510882273
JDRZ01000031
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
216
141
-
Lys
CTT
[ENA]
¡û
>W1510882364
JDSA01000191
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
474
549
+
Lys
CTT
[ENA]
¡û
>W1510909049
JENJ01000115
Bacillota
Clostridium novyi A str. 4552 [JENJ]
426
351
-
Lys
CTT
[ENA]
¡û
>W11146092
AESA01000045
Bacillota
Clostridium botulinum C str. Stockholm [AESA]
4
79
+
Lys
CTT
[ENA]
¡û
>W11146153
AESB01000097
Bacillota
Clostridium botulinum BKT028387 [AESB]
5777
5852
+
Lys
CTT
[ENA]
¡û
>W11146193
AESC01000013
Bacillota
Clostridium botulinum V891 [AESC]
31991
32066
+
Lys
CTT
[ENA]
¡û
>W11146201
AESC01000013
Bacillota
Clostridium botulinum V891 [AESC]
32657
32732
+
Lys
CTT
[ENA]
¡û
>W1511707639
LGVO01000098
Bacillota
Clostridium botulinum 38028-CD [LGVO]
5793
5868
+
Lys
CTT
[ENA]
¡û
>W1511707647
LGVO01000098
Bacillota
Clostridium botulinum 38028-CD [LGVO]
6459
6534
+
Lys
CTT
[ENA]
¡û
>W1511707688
LGVP01000037
Bacillota
Clostridium botulinum 29401-CD [LGVP]
3211
3136
-
Lys
CTT
[ENA]
¡û
>W1610925168
LTBB01000004
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
88748
88673
-
Lys
CTT
[ENA]
¡û
>W1610925231
LTBB01000026
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
328
403
+
Lys
CTT
[ENA]
¡û
>W1610925239
LTBB01000026
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
1012
1087
+
Lys
CTT
[ENA]
¡û
>W1610925250
LTBB01000032
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
137
212
+
Lys
CTT
[ENA]
¡û
>W1610925258
LTBB01000032
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
821
896
+
Lys
CTT
[ENA]
¡û
>W1710561817
FOOL01000001
Bacillota
Clostridium homopropionicum [FOOL]
337317
337392
+
Lys
CTT
[ENA]
¡û
>W1710561821
FOOL01000001
Bacillota
Clostridium homopropionicum [FOOL]
337677
337752
+
Lys
CTT
[ENA]
¡û
>W1710754888
LHYQ01000008
Bacillota
Clostridium botulinum [LHYQ]
5909
5984
+
Lys
CTT
[ENA]
¡û
>W1710754957
LHYV01000020
Bacillota
Clostridium botulinum [LHYV]
62575
62500
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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