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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287443 (11 seq.)
>WENV181228565
OFEH01000231
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
3452
3526
+
Thr
CGT
[ENA]
¢þ
>WENV181407438
OGCG01027162
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1067
1141
+
Thr
CGT
[ENA]
¢þ
>WENV181407559
OGCG01042038
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
561
487
-
Thr
CGT
[ENA]
¢þ
>C08005596
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
956948
956874
-
Thr
CGT
[Ensembl]
¡û
>W09107129
ABFI01000008
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
14436
14362
-
Thr
CGT
[ENA]
¡û
>C151003665
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
945723
945649
-
Thr
CGT
[Ensembl]
¡û
>C151003709
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
945833
945759
-
Thr
CGT
[Ensembl]
¡û
>W10115175
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
277847
277921
+
Thr
CGT
[ENA]
¡û
>W11118761
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
277847
277921
+
Thr
CGT
[ENA]
¡û
>C131013404
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
945913
945839
-
Thr
CGT
[Ensembl]
¡û
>C131013716
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
945880
945806
-
Thr
CGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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