This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287458 (11 seq.)
>WENV181228464
OFEH01000026
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
44144
44217
+
Phe
GAA
[ENA]
¢þ
>WENV181406741
OGCG01001163
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
3480
3553
+
Phe
GAA
[ENA]
¢þ
>WENV181407347
OGCG01019018
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
841
768
-
Phe
GAA
[ENA]
¢þ
>C08005589
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
1409041
1408968
-
Phe
GAA
[Ensembl]
¡û
>W09107132
ABFI01000011
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
432
505
+
Phe
GAA
[ENA]
¡û
>C151003660
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
1393106
1393034
-
Phe
GAA
[Ensembl]
¡û
>C151003704
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
1392974
1392902
-
Phe
GAA
[Ensembl]
¡û
>W10115200
ADJO01000004
Aquificota
Hydrogenobaculum sp. SN [ADJO]
87637
87565
-
Phe
GAA
[ENA]
¡û
>W11118786
ADJO01000004
Aquificota
Hydrogenobaculum sp. SN [ADJO]
87637
87565
-
Phe
GAA
[ENA]
¡û
>C131013400
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
1393299
1393227
-
Phe
GAA
[Ensembl]
¡û
>C131013711
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
1393261
1393189
-
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK