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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287476 (118 seq.)
>W131229936
AUHE01000010
Actinomycetota
Gordonia shandongensis DSM 45094 [AUHE]
43460
43535
+
Lys
CTT
[ENA]
¡û
>C171001929
CP009246
Actinomycetota
Corynebacterium flavescens OJ8 [CP009246]
2132458
2132533
+
Lys
CTT
-
¡û
>W131159259
AQUX01000001
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
57723
57650
-
Lys
CTT
[ENA]
¡û
>WENV180697840
ODDE01006749
[ODDE] human metagenome; G_DNA_Supragingival plaque
1749
1822
+
Lys
CTT
[ENA]
¢þ
>WENV180725825
ODGS01003496
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
1606
1533
-
Lys
CTT
[ENA]
¢þ
>WENV180732310
ODGY01000118
[ODGY] human metagenome; G_DNA_Supragingival plaque
2276
2203
-
Lys
CTT
[ENA]
¢þ
>WENV180735839
ODHB01000953
[ODHB] human metagenome; G_DNA_Supragingival plaque
3204
3131
-
Lys
CTT
[ENA]
¢þ
>WENV180738719
ODHD01000374
[ODHD] human metagenome; G_DNA_Supragingival plaque
30186
30259
+
Lys
CTT
[ENA]
¢þ
>WENV180750465
ODHS01002535
[ODHS] human metagenome; G_DNA_Supragingival plaque
5373
5446
+
Lys
CTT
[ENA]
¢þ
>WENV180754775
ODHU01000804
[ODHU] human metagenome; G_DNA_Supragingival plaque
6487
6560
+
Lys
CTT
[ENA]
¢þ
>WENV180764667
ODIB01000263
[ODIB] human metagenome; G_DNA_Supragingival plaque
14169
14242
+
Lys
CTT
[ENA]
¢þ
>WENV180765854
ODID01003088
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
1421
1494
+
Lys
CTT
[ENA]
¢þ
>WENV180775067
ODIJ01193070
[ODIJ] human metagenome; G_DNA_Tongue dorsum
133
206
+
Lys
CTT
[ENA]
¢þ
>WENV180777706
ODIL01058144
[ODIL] human metagenome; G_DNA_Supragingival plaque
264
191
-
Lys
CTT
[ENA]
¢þ
>WENV180778195
ODIM01001311
[ODIM] human metagenome; G_DNA_Supragingival plaque
3638
3565
-
Lys
CTT
[ENA]
¢þ
>WENV180781551
ODIP01000670
[ODIP] human metagenome; G_DNA_Supragingival plaque
3260
3187
-
Lys
CTT
[ENA]
¢þ
>WENV180787748
ODIS01013711
[ODIS] human metagenome; G_DNA_Supragingival plaque
2271
2198
-
Lys
CTT
[ENA]
¢þ
>WENV180795282
ODIZ01083464
[ODIZ] human metagenome; G_DNA_Tongue dorsum
177
104
-
Lys
CTT
[ENA]
¢þ
>WENV180796165
ODJB01001693
[ODJB] human metagenome; G_DNA_Supragingival plaque
1682
1609
-
Lys
CTT
[ENA]
¢þ
>WENV180800484
ODJD01000045
[ODJD] human metagenome; G_DNA_Supragingival plaque
9804
9877
+
Lys
CTT
[ENA]
¢þ
>WENV180803596
ODJG01000001
[ODJG] human metagenome; G_DNA_Supragingival plaque
110228
110155
-
Lys
CTT
[ENA]
¢þ
>WENV180808746
ODJK01000842
[ODJK] human metagenome; G_DNA_Subgingival plaque
2925
2852
-
Lys
CTT
[ENA]
¢þ
>WENV180812891
ODJO01000001
[ODJO] human metagenome; G_DNA_Supragingival plaque
125847
125774
-
Lys
CTT
[ENA]
¢þ
>WENV180822213
ODJT01000082
[ODJT] human metagenome; G_DNA_Supragingival plaque
30058
29985
-
Lys
CTT
[ENA]
¢þ
>WENV180822976
ODJW01001450
[ODJW] human metagenome; G_DNA_Supragingival plaque
2493
2566
+
Lys
CTT
[ENA]
¢þ
>WENV180824397
ODJX01005274
[ODJX] human metagenome; G_DNA_Supragingival plaque
2171
2098
-
Lys
CTT
[ENA]
¢þ
>WENV180832559
ODKC01002274
[ODKC] human metagenome; G_DNA_Supragingival plaque
3962
3889
-
Lys
CTT
[ENA]
¢þ
>WENV180834258
ODKD01008049
[ODKD] human metagenome; G_DNA_Supragingival plaque
476
549
+
Lys
CTT
[ENA]
¢þ
>WENV180835355
ODKE01002395
[ODKE] human metagenome; G_DNA_Supragingival plaque
5141
5214
+
Lys
CTT
[ENA]
¢þ
>WENV180842202
ODKM01001941
[ODKM] human metagenome; G_DNA_Buccal mucosa
637
564
-
Lys
CTT
[ENA]
¢þ
>WENV180842867
ODKN01000042
[ODKN] human metagenome; G_DNA_Supragingival plaque
94157
94230
+
Lys
CTT
[ENA]
¢þ
>WENV180846228
ODKT01007114
[ODKT] human metagenome; G_DNA_Supragingival plaque
2964
3037
+
Lys
CTT
[ENA]
¢þ
>WENV180859045
ODLD01000001
[ODLD] human metagenome; G_DNA_Supragingival plaque
840572
840645
+
Lys
CTT
[ENA]
¢þ
>WENV180862354
ODLE01088154
[ODLE] human metagenome; G_DNA_Tongue dorsum
98
25
-
Lys
CTT
[ENA]
¢þ
>WENV180881320
ODMA01000003
[ODMA] human metagenome; G_DNA_Supragingival plaque
75474
75547
+
Lys
CTT
[ENA]
¢þ
>WENV180888081
ODMN01000043
[ODMN] human metagenome; G_DNA_Supragingival plaque
85411
85484
+
Lys
CTT
[ENA]
¢þ
>WENV180921285
ODTJ01000015
[ODTJ] human metagenome; G_DNA_Supragingival plaque
114279
114352
+
Lys
CTT
[ENA]
¢þ
>WENV180923508
ODTK01000007
[ODTK] human metagenome; G_DNA_Supragingival plaque
81053
80980
-
Lys
CTT
[ENA]
¢þ
>WENV180927525
ODTM01001036
[ODTM] human metagenome; G_DNA_Supragingival plaque
4352
4425
+
Lys
CTT
[ENA]
¢þ
>WENV180933745
ODTR01001942
[ODTR] human metagenome; G_DNA_Supragingival plaque
102
29
-
Lys
CTT
[ENA]
¢þ
>WENV180934689
ODTS01001170
[ODTS] human metagenome; G_DNA_Subgingival plaque
4656
4729
+
Lys
CTT
[ENA]
¢þ
>WENV180938546
ODTX01003076
[ODTX] human metagenome; G_DNA_Supragingival plaque
2782
2709
-
Lys
CTT
[ENA]
¢þ
>WENV180943551
ODUC01000925
[ODUC] human metagenome; G_DNA_Supragingival plaque
13602
13675
+
Lys
CTT
[ENA]
¢þ
>WENV180951270
ODUH01014918
[ODUH] human metagenome; G_DNA_Subgingival plaque
1772
1845
+
Lys
CTT
[ENA]
¢þ
>WENV180958277
ODUL01002003
[ODUL] human metagenome; G_DNA_Supragingival plaque
3162
3089
-
Lys
CTT
[ENA]
¢þ
>WENV180963854
ODUO01000009
[ODUO] human metagenome; G_DNA_Supragingival plaque
158573
158646
+
Lys
CTT
[ENA]
¢þ
>WENV180972678
ODUW01000036
[ODUW] human metagenome; G_DNA_Supragingival plaque
82693
82620
-
Lys
CTT
[ENA]
¢þ
>WENV180975280
ODUY01003911
[ODUY] human metagenome; G_DNA_Supragingival plaque
2222
2295
+
Lys
CTT
[ENA]
¢þ
>WENV180980258
ODVE01000006
[ODVE] human metagenome; G_DNA_Supragingival plaque
110070
110143
+
Lys
CTT
[ENA]
¢þ
>WENV180982722
ODVF01000382
[ODVF] human metagenome; G_DNA_Supragingival plaque
23338
23265
-
Lys
CTT
[ENA]
¢þ
>WENV180986944
ODVK01002268
[ODVK] human metagenome; G_DNA_Supragingival plaque
2371
2298
-
Lys
CTT
[ENA]
¢þ
>WENV180998012
ODVT01000001
[ODVT] human metagenome; G_DNA_Buccal mucosa
75
2
-
Lys
CTT
[ENA]
¢þ
>WENV181002068
ODVX01000010
[ODVX] human metagenome; G_DNA_Supragingival plaque
64547
64620
+
Lys
CTT
[ENA]
¢þ
>WENV181012574
ODWK01001519
[ODWK] human metagenome; G_DNA_Supragingival plaque
3196
3123
-
Lys
CTT
[ENA]
¢þ
>WENV181017555
ODWR01141938
[ODWR] human metagenome; G_DNA_Tongue dorsum
42
115
+
Lys
CTT
[ENA]
¢þ
>WENV181018864
ODWU01000146
[ODWU] human metagenome; G_DNA_Supragingival plaque
31710
31637
-
Lys
CTT
[ENA]
¢þ
>WENV181029372
ODXF01000201
[ODXF] human metagenome; G_DNA_Supragingival plaque
21794
21721
-
Lys
CTT
[ENA]
¢þ
>WENV181043123
ODXU01046761
[ODXU] human metagenome; G_DNA_Buccal mucosa
126
199
+
Lys
CTT
[ENA]
¢þ
>WENV181049527
ODYD01000485
[ODYD] human metagenome; G_DNA_Supragingival plaque
6954
7027
+
Lys
CTT
[ENA]
¢þ
>WENV181062890
ODYP01000001
[ODYP] human metagenome; G_DNA_Supragingival plaque
814751
814824
+
Lys
CTT
[ENA]
¢þ
>WENV181066754
ODZI01001466
[ODZI] human metagenome; G_DNA_Supragingival plaque
6035
5962
-
Lys
CTT
[ENA]
¢þ
>WENV181075982
OEAP01001011
[OEAP] human metagenome; G_DNA_Supragingival plaque
15063
15136
+
Lys
CTT
[ENA]
¢þ
>WENV181079160
OEAS01002542
[OEAS] human metagenome; G_DNA_Supragingival plaque
5992
5919
-
Lys
CTT
[ENA]
¢þ
>WENV181083720
OEAV01019456
[OEAV] human metagenome; G_DNA_Supragingival plaque
476
549
+
Lys
CTT
[ENA]
¢þ
>WENV181090107
OEBC01000001
[OEBC] human metagenome; G_DNA_Supragingival plaque
22935
22862
-
Lys
CTT
[ENA]
¢þ
>WENV181106566
OEEI01000001
[OEEI] human metagenome; G_DNA_Supragingival plaque
125832
125759
-
Lys
CTT
[ENA]
¢þ
>WENV181120287
OEFJ01019678
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
312
239
-
Lys
CTT
[ENA]
¢þ
>WENV181121132
OEFL01000611
[OEFL] human metagenome; G_DNA_Supragingival plaque
7920
7993
+
Lys
CTT
[ENA]
¢þ
>WENV181137240
OEGJ01000968
[OEGJ] human metagenome; G_DNA_Supragingival plaque
7671
7744
+
Lys
CTT
[ENA]
¢þ
>WENV181142997
OEHM01000038
[OEHM] human metagenome; G_DNA_Supragingival plaque
121900
121973
+
Lys
CTT
[ENA]
¢þ
>WENV181145862
OEHQ01000169
[OEHQ] human metagenome; G_DNA_Supragingival plaque
2954
2881
-
Lys
CTT
[ENA]
¢þ
>WENV181151944
OEIA01000001
[OEIA] human metagenome; G_DNA_Supragingival plaque
302306
302379
+
Lys
CTT
[ENA]
¢þ
>WENV181158745
OEIH01008647
[OEIH] human metagenome; G_DNA_Supragingival plaque
1587
1514
-
Lys
CTT
[ENA]
¢þ
>WENV181160028
OEIK01001462
[OEIK] human metagenome; G_DNA_Supragingival plaque
4287
4360
+
Lys
CTT
[ENA]
¢þ
>WENV181177132
OEJS01000020
[OEJS] human metagenome; G_DNA_Supragingival plaque
80849
80922
+
Lys
CTT
[ENA]
¢þ
>WENV181178961
OEJT01000731
[OEJT] human metagenome; G_DNA_Supragingival plaque
3890
3817
-
Lys
CTT
[ENA]
¢þ
>WENV181181550
OEJV01000001
[OEJV] human metagenome; G_DNA_Supragingival plaque
121796
121723
-
Lys
CTT
[ENA]
¢þ
>WENV181212243
OFBN01000793
[OFBN] metagenome; hydrothermal vent
1406
1479
+
Lys
CTT
[ENA]
¢þ
>WENV181212328
OFBO01000645
[OFBO] metagenome; hydrothermal vent
179
106
-
Lys
CTT
[ENA]
¢þ
>WENV181212403
OFBP01000963
[OFBP] metagenome; hydrothermal vent
75
2
-
Lys
CTT
[ENA]
¢þ
>WENV181212485
OFBQ01000992
[OFBQ] metagenome; hydrothermal vent
75
2
-
Lys
CTT
[ENA]
¢þ
>WENV181212555
OFBR01000756
[OFBR] metagenome; hydrothermal vent
162
89
-
Lys
CTT
[ENA]
¢þ
>WENV181212647
OFBS01001671
[OFBS] metagenome; hydrothermal vent
667
740
+
Lys
CTT
[ENA]
¢þ
>WENV181212713
OFBT01000722
[OFBT] metagenome; hydrothermal vent
179
106
-
Lys
CTT
[ENA]
¢þ
>W141259159
CBYN010000005
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
34308
34235
-
Lys
CTT
[ENA]
¡û
>WENV183508320
OMHC01003006
[OMHC] human oral metagenome; human oral
234
307
+
Lys
CTT
[ENA]
¢þ
>WENV183508714
OMHF01000500
[OMHF] human oral metagenome; human oral
164
237
+
Lys
CTT
[ENA]
¢þ
>WENV183509370
OMHI01000233
[OMHI] human oral metagenome; human oral
2225
2152
-
Lys
CTT
[ENA]
¢þ
>WENV183509636
OMHJ01002095
[OMHJ] human oral metagenome; human oral
493
420
-
Lys
CTT
[ENA]
¢þ
>WENV183509829
OMHK01000096
[OMHK] human oral metagenome; human oral
2589
2662
+
Lys
CTT
[ENA]
¢þ
>WENV183510243
OMHN01000297
[OMHN] human oral metagenome; human oral
1017
1090
+
Lys
CTT
[ENA]
¢þ
>WENV183510711
OMHQ01004067
[OMHQ] human oral metagenome; human oral
430
503
+
Lys
CTT
[ENA]
¢þ
>WENV183511009
OMHV01000774
[OMHV] human oral metagenome; human oral
702
775
+
Lys
CTT
[ENA]
¢þ
>WENV170722478
LSQX01230822
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6758
6833
+
Lys
CTT
[ENA]
¢þ
>C181143890
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
1848796
1848869
+
Lys
CTT
-
¡û
>C191213025
LR134504
Actinomycetota
Corynebacterium matruchotii NCTC10206 [LR134504]
2713261
2713334
+
Lys
CTT
-
¡û
>W141563959
JIAJ01000003
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
68688
68613
-
Lys
CTT
[ENA]
¡û
>W09119758
ACEB01000022
Actinomycetota
Corynebacterium matruchotii ATCC 33806 [ACEB]
82013
81938
-
Lys
CTT
[ENA]
¡û
>W09124045
ACHJ01000097
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
95
20
-
Lys
CTT
[ENA]
¡û
>W09134388
ACSH01000019
Actinomycetota
Corynebacterium matruchotii ATCC 14266 [ACSH]
120020
119945
-
Lys
CTT
[ENA]
¡û
>W1910182659
BJNB01000075
Actinomycetota
Corynebacterium flavescens NBRC 14136 [BJNB]
330
257
-
Lys
CTT
[ENA]
¡û
>W1911179015
NQMQ01000002
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
50570
50497
-
Lys
CTT
[ENA]
¡û
>W1911243327
NSGK01000003
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
257081
257154
+
Lys
CTT
[ENA]
¡û
>W1911243393
NSGL01000002
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
55201
55128
-
Lys
CTT
[ENA]
¡û
>W1911243422
NSGM01000001
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
554102
554175
+
Lys
CTT
[ENA]
¡û
>W1911243483
NSGN01000004
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
169796
169869
+
Lys
CTT
[ENA]
¡û
>W1911243541
NSGO01000004
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
37348
37275
-
Lys
CTT
[ENA]
¡û
>W1911243618
NSGP01000022
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
28321
28248
-
Lys
CTT
[ENA]
¡û
>W1810568914
QEEY01000010
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
35865
35792
-
Lys
CTT
[ENA]
¡û
>C151007274
CP005286
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [CP005286]
2147443
2147518
+
Lys
CTT
[Ensembl]
¡û
>C151012240
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
2175714
2175787
+
Lys
CTT
[Ensembl]
¡û
>C151045686
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
2320078
2320153
+
Lys
CTT
-
¡û
>C151045687
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
2320241
2320316
+
Lys
CTT
-
¡û
>W1610069806
BCSU01000005
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
43855
43780
-
Lys
CTT
[ENA]
¡û
>W1610436796
FJVG01000016
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
135434
135509
+
Lys
CTT
[ENA]
¡û
>C131005399
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
2515727
2515802
+
Lys
CTT
[Ensembl]
¡û
>W1710067179
BCSU01000005
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
43855
43780
-
Lys
CTT
[ENA]
¡û
>W1710436532
FJVG01000016
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
135434
135509
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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