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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287497 (46 seq.)
>W1711078700
LSNC01000067
Alphaproteobacteria
Methylorubrum populi [LSNC]
117147
117071
-
Asp
GTC
[ENA]
¡û
>W131051742
AMXU01000078
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
49980
50056
+
Asp
GTC
[ENA]
¡û
>W131222237
AUBC01000007
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
180613
180537
-
Asp
GTC
[ENA]
¡û
>w001818
AAAP01001707
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
168
246
+
Asp
GTC
[ENA]
¡û
>WENV180690794
OCZS010025483
[OCZS] soil metagenome; soil
1505
1581
+
Asp
GTC
[ENA]
¢þ
>WENV181166430
OEIU01000281
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2724
2800
+
Asp
GTC
[ENA]
¢þ
>W141220791
AZYE01001990
Alphaproteobacteria
Microvirga lupini [AZYE]
7433
7509
+
Asp
GTC
[ENA]
¡û
>W141241675
CAHM01000035
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
42746
42822
+
Asp
GTC
[ENA]
¡û
>W141276739
JAEA01000011
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
63356
63280
-
Asp
GTC
[ENA]
¡û
>W141276748
JAEA01000018
Alphaproteobacteria
Microvirga flocculans ATCC BAA-817 [JAEA]
8872
8948
+
Asp
GTC
[ENA]
¡û
>C08006630
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
1085073
1085149
+
Asp
GTC
[Ensembl]
¡û
>WENV170577720
FSSH01000595
[FSSH] freshwater metagenome; drinking water
35089
35165
+
Asp
GTC
[ENA]
¢þ
>WENV170593581
FUFK010917273
[FUFK] metagenome; unknown
266
190
-
Asp
GTC
[ENA]
¢þ
>WENV170595758
FUFK011959469
[FUFK] metagenome; unknown
209
133
-
Asp
GTC
[ENA]
¢þ
>WENV170682486
LFIK01000194
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
35038
35114
+
Asp
GTC
[ENA]
¢þ
>WENV170683162
LFIK01005780
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
978
1054
+
Asp
GTC
[ENA]
¢þ
>C181000342
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
1186862
1186938
+
Asp
GTC
-
¡û
>C181020298
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
4565448
4565524
+
Asp
GTC
-
¡û
>C181020301
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
5751856
5751932
+
Asp
GTC
-
¡û
>C181175630
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
1000167
1000243
+
Asp
GTC
-
¡û
>C181179093
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
964589
964665
+
Asp
GTC
-
¡û
>C181179103
CP029481
Alphaproteobacteria
Microvirga sp. 17 mud 1-3 [CP029481]
1951736
1951812
+
Asp
GTC
-
¡û
>W09107187
ABFR01000006
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
68409
68485
+
Asp
GTC
[ENA]
¡û
>W141810192
JPUG01000054
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
11819
11895
+
Asp
GTC
[ENA]
¡û
>W141810209
JPUG01000069
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
65115
65039
-
Asp
GTC
[ENA]
¡û
>W141821061
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
1303768
1303844
+
Asp
GTC
[ENA]
¡û
>W1911653555
QDGA01000003
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
177227
177303
+
Asp
GTC
[ENA]
¡û
>W1911653580
QDGA01000026
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
61901
61825
-
Asp
GTC
[ENA]
¡û
>W1810534730
QDAH01000026
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
22957
23033
+
Asp
GTC
[ENA]
¡û
>W1810534748
QDAH01000064
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
7122
7198
+
Asp
GTC
[ENA]
¡û
>W1810658540
QJJJ01000007
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
65347
65423
+
Asp
GTC
[ENA]
¡û
>W1810735497
QOIO01000013
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
56694
56770
+
Asp
GTC
[ENA]
¡û
>W1810735512
QOIO01000027
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
3271
3195
-
Asp
GTC
[ENA]
¡û
>W1810763397
QQBB01000001
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
379970
379894
-
Asp
GTC
[ENA]
¡û
>W1810763434
QQBB01000008
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
13010
13086
+
Asp
GTC
[ENA]
¡û
>W1510081364
CDSD01000046
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
42746
42822
+
Asp
GTC
[ENA]
¡û
>W1511624245
LCYG01000004
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
94775
94851
+
Asp
GTC
[ENA]
¡û
>W1511624263
LCYG01000023
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
170403
170327
-
Asp
GTC
[ENA]
¡û
>W1610043168
BAZP01000140
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1573
1649
+
Asp
GTC
[ENA]
¡û
>W121068018
AJUA01000052
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
270048
270124
+
Asp
GTC
[ENA]
¡û
>W121068048
AJUA01000079
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
8079
8155
+
Asp
GTC
[ENA]
¡û
>W1610917610
LSNC01000067
Alphaproteobacteria
Methylorubrum populi [LSNC]
117147
117071
-
Asp
GTC
[ENA]
¡û
>W1710040328
BAZP01000140
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1573
1649
+
Asp
GTC
[ENA]
¡û
>W1710507574
FMVJ01000006
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
355555
355479
-
Asp
GTC
[ENA]
¡û
>W1710507598
FMVJ01000026
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
7723
7799
+
Asp
GTC
[ENA]
¡û
>W1710567529
FOSV01000002
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
151821
151745
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK