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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287503 (11 seq.)
>WENV181228686
OFEH01001076
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
6307
6235
-
Asn
GTT
[ENA]
¢þ
>WENV181407517
OGCG01035766
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
476
404
-
Asn
GTT
[ENA]
¢þ
>WENV181407574
OGCG01043652
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
584
511
-
Asn
GTT
[ENA]
¢þ
>C08005571
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
136616
136688
+
Asn
GTT
[Ensembl]
¡û
>W09107125
ABFI01000004
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
29290
29218
-
Asn
GTT
[ENA]
¡û
>C151003640
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
140079
140151
+
Asn
GTT
[Ensembl]
¡û
>C151003684
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
140115
140187
+
Asn
GTT
[Ensembl]
¡û
>W10115186
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
177215
177287
+
Asn
GTT
[ENA]
¡û
>W11118772
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
177215
177287
+
Asn
GTT
[ENA]
¡û
>C131013380
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
140114
140186
+
Asn
GTT
[Ensembl]
¡û
>C131013691
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
140076
140148
+
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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