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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287548 (33 seq.)
>W1711414056
MGXL01000141
Gammaproteobacteria
Gammaproteobacteria bacterium RBG_16_57_12 [MGXL]
13077
13153
+
Arg
ACG
[ENA]
¡û
>WENV180014987
FQKF010255084
[FQKF] soil metagenome; Soil
136
210
+
Arg
ACG
[ENA]
¢þ
>WENV180035723
FTLB01001621
[FTLB] metagenome; soil
469
393
-
Arg
ACG
[ENA]
¢þ
>WENV180343293
OBLK01001898
[OBLK] soil metagenome; Clay
92
16
-
Arg
ACG
[ENA]
¢þ
>WENV181166792
OEIU01002159
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3330
3254
-
Arg
ACG
[ENA]
¢þ
>WENV183093422
OLMB01000189
[OLMB] soil metagenome; soil
637
713
+
Arg
ACG
[ENA]
¢þ
>WENV170551919
CXWJ01030181
[CXWJ] wastewater metagenome; activated sludge
1928
1852
-
Arg
ACG
[ENA]
¢þ
>WENV170667997
LADL02000058
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
3873
3949
+
Arg
ACG
[ENA]
¢þ
>C181160757
CP027860
Gammaproteobacteria
Ahniella affigens D13 [CP027860]
4393885
4393809
-
Arg
ACG
-
¡û
>C191003488
AP018560
Gammaproteobacteria
Aerosticca soli Dysh456 [AP018560]
2102919
2102843
-
Arg
ACG
-
¡û
>W141564947
JIBD01000016
Gammaproteobacteria
Dyella japonica UNC79MFTsu3.2 [JIBD]
586956
586880
-
Arg
ACG
[ENA]
¡û
>W1910896578
NFZS01000001
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
1960514
1960590
+
Arg
ACG
[ENA]
¡û
>W1911199817
NRDP01000030
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
34366
34290
-
Arg
ACG
[ENA]
¡û
>W1810485574
QAVX01000010
Gammaproteobacteria
Dyella sp. C11 [QAVX]
6419
6343
-
Arg
ACG
[ENA]
¡û
>W1810597195
QGHC01000001
Gammaproteobacteria
Fulvimonas soli DSM 14263 [QGHC]
367198
367274
+
Arg
ACG
[ENA]
¡û
>W1810628322
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
230644
230568
-
Arg
ACG
[ENA]
¡û
>W1810629400
QIRF01000001
Gammaproteobacteria
Dyella sp. C9 [QIRF]
423321
423397
+
Arg
ACG
[ENA]
¡û
>W1810762586
QQAH01000001
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
411023
410947
-
Arg
ACG
[ENA]
¡û
>W1810783260
QQSY01000003
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
558297
558373
+
Arg
ACG
[ENA]
¡û
>W1810785130
QRBF01000001
Gammaproteobacteria
Dyella psychrodurans 4MSK11 [QRBF]
905024
904948
-
Arg
ACG
[ENA]
¡û
>C151023747
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
2417606
2417530
-
Arg
ACG
[Ensembl]
¡û
>C151039104
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
3468222
3468146
-
Arg
ACG
[Ensembl]
¡û
>W1510018816
BBUM02000050
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
28015
28091
+
Arg
ACG
[ENA]
¡û
>W1511305056
JPLA01000022
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
112008
112084
+
Arg
ACG
[ENA]
¡û
>W1511686269
LFQR01000030
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
84349
84425
+
Arg
ACG
[ENA]
¡û
>C161085660
CP015249
Gammaproteobacteria
Dokdonella koreensis DS-123 [CP015249]
2330353
2330277
-
Arg
ACG
[Ensembl]
¡û
>W121060816
AJGC01000001
Gammaproteobacteria
Rickettsiella massiliensis 20B [AJGC]
573387
573311
-
Arg
ACG
[ENA]
¡û
>W121113875
ALOY01000118
Gammaproteobacteria
Dyella japonica A8 [ALOY]
13300
13224
-
Arg
ACG
[ENA]
¡û
>W1710519800
FNFA01000004
Gammaproteobacteria
Dyella jiangningensis [FNFA]
182630
182706
+
Arg
ACG
[ENA]
¡û
>W1710541147
FNYC01000003
Gammaproteobacteria
Frateuria terrea [FNYC]
142730
142806
+
Arg
ACG
[ENA]
¡û
>W1710560305
FONH01000001
Gammaproteobacteria
Dyella marensis [FONH]
586812
586736
-
Arg
ACG
[ENA]
¡û
>W1710573385
FOXL01000004
Gammaproteobacteria
Frateuria terrea [FOXL]
408690
408614
-
Arg
ACG
[ENA]
¡û
>W1710575662
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
108100
108176
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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