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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287555 (24 seq.)
>W131186335
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
462752
462676
-
Met
CAT
[ENA]
¡û
>W131218792
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
1560463
1560387
-
Met
CAT
[ENA]
¡û
>WENV181166826
OEIU01002793
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
474
550
+
Met
CAT
[ENA]
¢þ
>W08008853
ABLP01000006
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
157054
156981
-
Met
CAT
[ENA]
¡û
>C08001605
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
3051495
3051422
-
Met
CAT
[Ensembl]
¡û
>WENV170012150
APMI01126637
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1080
1156
+
Met
CAT
[ENA]
¢þ
>WENV170012213
APMI01136790
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
514
590
+
Met
CAT
[ENA]
¢þ
>WENV170552695
CXWK01001023
[CXWK] wastewater metagenome; activated sludge
6445
6521
+
Met
CAT
[ENA]
¢þ
>WENV170974343
MTKY01058296
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4236
4312
+
Met
CAT
[ENA]
¢þ
>C191028866
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
2500673
2500749
+
Met
CAT
-
¡û
>C191029939
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
1739238
1739162
-
Met
CAT
-
¡û
>C191220337
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
3887637
3887561
-
Met
CAT
-
¡û
>C191221060
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
1387996
1388072
+
Met
CAT
-
¡û
>W141815726
JQJH01000018
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
12860
12784
-
Met
CAT
[ENA]
¡û
>W141817275
JQKO01000004
Alphaproteobacteria
Methylocapsa aurea [JQKO]
91083
91007
-
Met
CAT
[ENA]
¡û
>W1911148331
NPET01000040
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
10207
10131
-
Met
CAT
[ENA]
¡û
>C09107907
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
4263942
4264018
+
Met
CAT
[Ensembl]
¡û
>W1911219126
NRRJ01000040
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
16735
16811
+
Met
CAT
[ENA]
¡û
>W1810068775
PDZR01000001
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
669968
670044
+
Met
CAT
[ENA]
¡û
>W1810884342
QUMO01000001
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
85637
85713
+
Met
CAT
[ENA]
¡û
>W1810887326
QUOY01000001
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
1326546
1326622
+
Met
CAT
[ENA]
¡û
>ENV09004062
ADIG01003154
Groundwater metagenome 4000601.lucy.pga.C1
622
546
-
Met
CAT
[ENA]
¡û
>W1710567190
FOSN01000016
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
14478
14554
+
Met
CAT
[ENA]
¡û
>W1710609867
FYDG01000008
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
10225
10149
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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