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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287573 (50 seq.)
>W1710864887
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1450044
1450120
+
Pro
TGG
[ENA]
¡û
>W1710869722
LMJY01000012
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
178712
178788
+
Pro
TGG
[ENA]
¡û
>W1710912905
LNSA01000001
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
82435
82511
+
Pro
TGG
[ENA]
¡û
>W1711259767
LYVN01000017
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
3472
3396
-
Pro
TGG
[ENA]
¡û
>W1711506415
MKWJ01000025
Alphaproteobacteria
Sphingomonas sp. 67-41 [MKWJ]
62383
62459
+
Pro
TGG
[ENA]
¡û
>W1712049846
NFUR01000003
Alphaproteobacteria
Sphingomonas sp. IBVSS2 [NFUR]
88937
89013
+
Pro
TGG
[ENA]
¡û
>C171056566
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1271711
1271787
+
Pro
TGG
-
¡û
>C171128435
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
2131675
2131599
-
Pro
TGG
-
¡û
>C019724
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1342805
1342881
+
Pro
TGG
[Ensembl]
¡û
>WENV180020129
FTCV01002231
[FTCV] metagenome; soil
6110
6034
-
Pro
TGG
[ENA]
¢þ
>WENV180100126
OAOK01000028
[OAOK] sediment metagenome; sediment
82817
82893
+
Pro
TGG
[ENA]
¢þ
>WENV180100434
OAON01001593
[OAON] sediment metagenome; sediment
2017
1941
-
Pro
TGG
[ENA]
¢þ
>WENV180284709
OBID01093941
[OBID] metagenome; sludge
155
231
+
Pro
TGG
[ENA]
¢þ
>WENV180355288
OBNH01000272
[OBNH] sediment metagenome; sediment
6452
6528
+
Pro
TGG
[ENA]
¢þ
>WENV180355507
OBNI01000141
[OBNI] sediment metagenome; sediment
16633
16557
-
Pro
TGG
[ENA]
¢þ
>WENV180355791
OBNJ01000440
[OBNJ] sediment metagenome; sediment
7793
7717
-
Pro
TGG
[ENA]
¢þ
>WENV180356217
OBNK01002087
[OBNK] sediment metagenome; sediment
303
227
-
Pro
TGG
[ENA]
¢þ
>WENV181166916
OEIU01004120
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3035
3111
+
Pro
TGG
[ENA]
¢þ
>WENV181402726
OFTY01028485
[OFTY] sludge metagenome; sludge
95
19
-
Pro
TGG
[ENA]
¢þ
>WENV183726121
PJQF01088187
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
138
62
-
Pro
TGG
[ENA]
¢þ
>WENV183727420
PJTO01051381
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
161
85
-
Pro
TGG
[ENA]
¢þ
>WENV183733123
PJTY01000087
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
76092
76168
+
Pro
TGG
[ENA]
¢þ
>WENV183738052
PJUD01073502
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
681
605
-
Pro
TGG
[ENA]
¢þ
>WENV183739077
PJUE01001430
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
139
215
+
Pro
TGG
[ENA]
¢þ
>WENV171003511
NNBU01000230
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
7610
7534
-
Pro
TGG
[ENA]
¢þ
>WENV171003926
NNBV01004670
[NNBV] plant metagenome; symbiotic tissue sample KVS11
117414
117490
+
Pro
TGG
[ENA]
¢þ
>W141484939
JFYZ01000003
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
132519
132443
-
Pro
TGG
[ENA]
¡û
>C181192040
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1482280
1482356
+
Pro
TGG
-
¡û
>C191155752
CP037948
Alphaproteobacteria
Qipengyuania sediminis CGMCC 1.12928 [CP037948]
1054140
1054216
+
Pro
TGG
-
¡û
>C191163818
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
2532631
2532555
-
Pro
TGG
-
¡û
>W09102969
AAIP01000013
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [AAIP]
69523
69447
-
Pro
TGG
[ENA]
¡û
>W1910744342
MIAL01000016
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_01_FULL_65_24 [MIAL]
280300
280376
+
Pro
TGG
[ENA]
¡û
>W1911398115
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
729729
729653
-
Pro
TGG
[ENA]
¡û
>W1810107945
PHFW01000001
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
198443
198519
+
Pro
TGG
[ENA]
¡û
>W1510757004
JACU01000001
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
321985
322061
+
Pro
TGG
[ENA]
¡û
>W1511221185
JNFC01000073
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
110571
110495
-
Pro
TGG
[ENA]
¡û
>W1511519411
JXZE01000006
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
234697
234621
-
Pro
TGG
[ENA]
¡û
>C161021384
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
1844000
1844076
+
Pro
TGG
[Ensembl]
¡û
>C161043653
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
1930584
1930660
+
Pro
TGG
[Ensembl]
¡û
>C161055683
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
2154423
2154347
-
Pro
TGG
-
¡û
>W121081081
AKFJ01000037
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
1059
983
-
Pro
TGG
[ENA]
¡û
>W121086728
AKKE01000079
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
17517
17441
-
Pro
TGG
[ENA]
¡û
>W121119217
ALVC01000045
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
15060
15136
+
Pro
TGG
[ENA]
¡û
>W1610076980
BCZE01000008
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
40839
40763
-
Pro
TGG
[ENA]
¡û
>W1610614842
LGJH01000163
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
140048
139972
-
Pro
TGG
[ENA]
¡û
>W1610727233
LMGF01000005
Alphaproteobacteria
Sphingopyxis sp. Root1497 [LMGF]
1450044
1450120
+
Pro
TGG
[ENA]
¡û
>W1610732068
LMJY01000012
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
178712
178788
+
Pro
TGG
[ENA]
¡û
>W1610771264
LNSA01000001
Alphaproteobacteria
Sphingopyxis sp. H115 [LNSA]
82435
82511
+
Pro
TGG
[ENA]
¡û
>W1710074669
BCZE01000008
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
40839
40763
-
Pro
TGG
[ENA]
¡û
>W1710736088
LGJH01000163
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
140048
139972
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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