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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287576 (28 seq.)
>W1710785393
LJHV01000002
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
326164
326240
+
Arg
ACG
[ENA]
¡û
>W1710912884
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
37948
37872
-
Arg
ACG
[ENA]
¡û
>W1710912993
LNSB01000069
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
7186
7110
-
Arg
ACG
[ENA]
¡û
>W1710913036
LNSC01000079
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
10510
10586
+
Arg
ACG
[ENA]
¡û
>W1711386420
MEFH01000073
Alphaproteobacteria
Sphingopyxis sp. SCN 67-31 [MEFH]
25867
25791
-
Arg
ACG
[ENA]
¡û
>WENV181166955
OEIU01004844
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
442
518
+
Arg
ACG
[ENA]
¢þ
>WENV183729296
PJTQ01019364
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
96
20
-
Arg
ACG
[ENA]
¢þ
>WENV171002966
NKIC01000072
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
129
53
-
Arg
ACG
[ENA]
¢þ
>C181133083
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
2062730
2062654
-
Arg
ACG
-
¡û
>C191000368
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
1949603
1949527
-
Arg
ACG
-
¡û
>W141712237
JMQK01000016
Alphaproteobacteria
Pseudorhizobium marinum MGL06 [JMQK]
15744
15668
-
Arg
ACG
[ENA]
¡û
>W141776118
JOKI01000039
Alphaproteobacteria
Pseudorhizobium pelagicum R1-200B2 [JOKI]
15648
15572
-
Arg
ACG
[ENA]
¡û
>W141776160
JOKJ01000045
Alphaproteobacteria
Pseudorhizobium pelagicum R2-400B4 [JOKJ]
15648
15572
-
Arg
ACG
[ENA]
¡û
>W1910549092
FZPA01000001
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
428664
428740
+
Arg
ACG
[ENA]
¡û
>W1910934229
NIWD01000002
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
400834
400910
+
Arg
ACG
[ENA]
¡û
>W1810195461
PKRO01000014
Alphaproteobacteria
Porphyrobacter sp. TH134 [PKRO]
48138
48214
+
Arg
ACG
[ENA]
¡û
>C151051502
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
2094939
2095015
+
Arg
ACG
-
¡û
>W1511324677
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
584117
584041
-
Arg
ACG
[ENA]
¡û
>C161040487
CP012199
Alphaproteobacteria
Sphingopyxis granuli TFA [CP012199]
1999801
1999877
+
Arg
ACG
[Ensembl]
¡û
>C161093676
CP016033
Alphaproteobacteria
Erythrobacter neustonensis DSM 9434 [CP016033]
2369916
2369992
+
Arg
ACG
[Ensembl]
¡û
>W1610071377
BCUA01000038
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
10902
10978
+
Arg
ACG
[ENA]
¡û
>W1610649199
LJHV01000002
Alphaproteobacteria
Porphyrobacter sp. AAP60 [LJHV]
326164
326240
+
Arg
ACG
[ENA]
¡û
>W1610771243
LNRZ01000004
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
37948
37872
-
Arg
ACG
[ENA]
¡û
>W1610771352
LNSB01000069
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
7186
7110
-
Arg
ACG
[ENA]
¡û
>W1610771395
LNSC01000079
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
10510
10586
+
Arg
ACG
[ENA]
¡û
>WENV081013
ABEF01021568
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
222
144
-
Arg
ACG
[ENA]
>W1710068742
BCUA01000038
Alphaproteobacteria
Sphingopyxis granuli NBRC 100800 [BCUA]
10902
10978
+
Arg
ACG
[ENA]
¡û
>W1710602891
FUYP01000013
Alphaproteobacteria
Sphingopyxis flava [FUYP]
48061
47985
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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