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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287630 (40 seq.)
>W1710892378
LNDR01000100
Alphaproteobacteria
Rhizobiales bacterium Ga0077524 (LNDR)
508
432
-
Met
CAT
[ENA]
¡û
>W1710893168
LNEM01000015
Alphaproteobacteria
Rhizobiales bacterium Ga0077537 (LNEM)
89022
89098
+
Met
CAT
[ENA]
¡û
>C171057731
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 (CP017147)
1354859
1354935
+
Met
CAT
-
¡û
>C171057769
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 (CP017147)
889056
888980
-
Met
CAT
-
¡û
>WENV180025103
FTIL01124544
[FTIL] metagenome; soil
543
467
-
fMet
CAT
[ENA]
¢þ
>W141007513
AGWY01000015
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
205426
205502
+
Met
CAT
[ENA]
¡û
>WENV181167262
OEIU01016535
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2576
2652
+
fMet
CAT
[ENA]
¢þ
>WENV181222533
OFDC01000004
[OFDC] hot springs metagenome; Water
214529
214605
+
fMet
CAT
[ENA]
¢þ
>WENV182125663
OHJS01030528
[OHJS] human gut metagenome; feces
337
413
+
fMet
CAT
[ENA]
¢þ
>W141223309
BADD01000254
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
4583
4507
-
Met
CAT
[ENA]
¡û
>WENV182661779
OJMN01002457
[OJMN] human gut metagenome; feces
8443
8367
-
fMet
CAT
[ENA]
¢þ
>WENV182667302
OJNI01001592
[OJNI] human gut metagenome; feces
1043
1119
+
fMet
CAT
[ENA]
¢þ
>WENV183745096
PJUL01002251
[PJUL] feces metagenome; Chicken feces enriched on filter paper
4384
4460
+
fMet
CAT
[ENA]
¢þ
>WENV170577644
FSSH01000384
[FSSH] freshwater metagenome; drinking water
54612
54688
+
Met
CAT
[ENA]
¢þ
>WENV170634781
JAHE01065218
[JAHE] sediment metagenome; lake sediment
100
24
-
Met
CAT
[ENA]
¢þ
>WENV170662124
JXWV01205259
[JXWV] soil metagenome; rice field; organic FYM Plot
80
4
-
Met
CAT
[ENA]
¢þ
>WENV170710288
LNFM01001469
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
39930
39854
-
Met
CAT
[ENA]
¢þ
>WENV170711934
LNFM01008491
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20661
20737
+
Met
CAT
[ENA]
¢þ
>WENV170712919
LNFM01020480
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7008
6932
-
Met
CAT
[ENA]
¢þ
>WENV170713204
LNFM01026175
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
17
93
+
Met
CAT
[ENA]
¢þ
>WENV170713611
LNFM01035724
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
93
17
-
Met
CAT
[ENA]
¢þ
>WENV170715128
LNFM01136863
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
993
917
-
Met
CAT
[ENA]
¢þ
>WENV170987667
MWVX01241682
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
288
364
+
Met
CAT
[ENA]
¢þ
>W09135212
ACVL01000007
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
181065
181141
+
Met
CAT
[ENA]
¡û
>W1810252028
PQFZ01000025
Alphaproteobacteria
Bosea sp. 1131 (PQFZ)
72195
72119
-
Met
CAT
[ENA]
¡û
>W1810252031
PQFZ01000030
Alphaproteobacteria
Bosea sp. 1131 (PQFZ)
48467
48391
-
Met
CAT
[ENA]
¡û
>W1810252036
PQFZ01000043
Alphaproteobacteria
Bosea sp. 1131 (PQFZ)
5684
5760
+
Met
CAT
[ENA]
¡û
>W1810706705
QMKH01000017
Alphaproteobacteria
Microvirga sp. c27j1 (QMKH)
5486
5562
+
Met
CAT
[ENA]
¡û
>C151006789
CP004403
Alphaproteobacteria
endosymbiont of Acanthamoeba sp. UWC8
617300
617376
+
Met
CAT
[Ensembl]
¡û
>W1510072653
CDHO01000003
Alphaproteobacteria
Hyphomicrobium sp. GJ21 [CDHO]
1089425
1089501
+
Met
CAT
[ENA]
¡û
>C10107547
CP002083
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888
3106505
3106429
-
Met
CAT
[Ensembl]
¡û
>W1511388540
JSWE01000092
Alphaproteobacteria
endosymbiont of Acanthamoeba sp. UWC36 [JSWE]
118826
118750
-
Met
CAT
[ENA]
¡û
>W11168442
AFOF01000018
Alphaproteobacteria
Bradyrhizobiaceae bacterium SG-6C [AFOF]
2448
2524
+
Met
CAT
[ENA]
¡û
>W11181091
AGIS01000001
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [AGIS]
489242
489166
-
Met
CAT
[ENA]
¡û
>C131015812
CP005587
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1
3108580
3108656
+
Met
CAT
[Ensembl]
¡û
>W1610752644
LNDR01000100
Alphaproteobacteria
Rhizobiales bacterium Ga0077524 (LNDR)
508
432
-
Met
CAT
[ENA]
¡û
>W1610753434
LNEM01000015
Alphaproteobacteria
Rhizobiales bacterium Ga0077537 (LNEM)
89022
89098
+
Met
CAT
[ENA]
¡û
>W1710564918
FOQV01000004
Alphaproteobacteria
Bosea sp. OK403 (FOQV)
392481
392405
-
Met
CAT
[ENA]
¡û
>W1710564930
FOQV01000007
Alphaproteobacteria
Bosea sp. OK403 (FOQV)
5694
5770
+
Met
CAT
[ENA]
¡û
>W1710579367
FPCH01000003
Alphaproteobacteria
Hyphomicrobium facile (FPCH)
368314
368238
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK