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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287635 (23 seq.)
>WENV180096130
MTBK01111558
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
845
920
+
Val
TAC
[ENA]
¢þ
>WENV180098519
MTBK01251044
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
641
566
-
Val
TAC
[ENA]
¢þ
>WENV181231621
OFEK01043341
[OFEK] activated sludge metagenome; Anaerobic digester
811
736
-
Val
TAC
[ENA]
¢þ
>WENV170560762
CZCA01000440
[CZCA] anaerobic digester metagenome; anaerobic digester
30432
30507
+
Val
TAC
[ENA]
¢þ
>WENV170562197
CZCB01001400
[CZCB] anaerobic digester metagenome; anaerobic digester
869
794
-
Val
TAC
[ENA]
¢þ
>WENV170562290
CZCB01002003
[CZCB] anaerobic digester metagenome; anaerobic digester
32841
32916
+
Val
TAC
[ENA]
¢þ
>WENV170562609
CZCB01003892
[CZCB] anaerobic digester metagenome; anaerobic digester
3105
3030
-
Val
TAC
[ENA]
¢þ
>WENV170674928
LCWY01025174
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
183
108
-
Val
TAC
[ENA]
¢þ
>WENV170687901
LFRM01216445
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
324
249
-
Val
TAC
[ENA]
¢þ
>WENV170689261
LFRM01286001
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
131
56
-
Val
TAC
[ENA]
¢þ
>WENV170727035
LSQX01402292
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5124
5199
+
Ile
TAT
[ENA]
¢þ
>WENV170967165
MTKW01000441
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
14622
14697
+
Val
TAC
[ENA]
¢þ
>WENV170968695
MTKW01013185
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1013
938
-
Val
TAC
[ENA]
¢þ
>WENV170968705
MTKW01013186
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
800
725
-
Val
TAC
[ENA]
¢þ
>W1810694651
QLME01000020
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
4214
4289
+
Val
TAC
[ENA]
¡û
>W1810694670
QLME01000030
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
33457
33382
-
Val
TAC
[ENA]
¡û
>C10100132
CP002105
Bacillota
Acetohalobium arabaticum DSM 5501 [CP002105]
143168
143243
+
Val
TAC
[Ensembl]
¡û
>C10100157
CP002105
Bacillota
Acetohalobium arabaticum DSM 5501 [CP002105]
800856
800931
+
Val
TAC
[Ensembl]
¡û
>C10100175
CP002105
Bacillota
Acetohalobium arabaticum DSM 5501 [CP002105]
1420036
1419961
-
Val
TAC
[Ensembl]
¡û
>C11110036
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
2188545
2188470
-
Val
TAC
[Ensembl]
¡û
>C11110053
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
1646986
1646911
-
Val
TAC
[Ensembl]
¡û
>W1710518848
FNEH01000001
Bacillota
Halanaerobium congolense [FNEH]
122917
122842
-
Val
TAC
[ENA]
¡û
>W1710518887
FNEH01000035
Bacillota
Halanaerobium congolense [FNEH]
20249
20174
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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