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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288118 (65 seq.)
>C171098330
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2600308
2600233
-
Glu
TTC
-
¡û
>C171098337
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
94967
94892
-
Glu
TTC
-
¡û
>W131160385
AQWN01000010
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
104562
104487
-
Glu
TTC
[ENA]
¡û
>W131160391
AQWN01000012
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
76878
76803
-
Glu
TTC
[ENA]
¡û
>W131160394
AQWN01000014
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
33509
33434
-
Glu
TTC
[ENA]
¡û
>W131242944
CAOS01000001
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
161208
161133
-
Glu
TTC
[ENA]
¡û
>W131242998
CAOS01000013
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
280031
280106
+
Glu
TTC
[ENA]
¡û
>C008014
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
2349174
2349249
+
Glu
TTC
[Ensembl]
¡û
>C008025
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
3580891
3580816
-
Glu
TTC
[Ensembl]
¡û
>C008027
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
3580689
3580614
-
Glu
TTC
[Ensembl]
¡û
>C008040
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
2679654
2679579
-
Glu
TTC
[Ensembl]
¡û
>C018180
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
927794
927869
+
Glu
TTC
[Ensembl]
¡û
>WENV170658776
JUEG02000561
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
18134
18059
-
Glu
TTC
[ENA]
¢þ
>WENV170677648
LDZT01007639
[LDZT] terrestrial metagenome; oil reservoir sample SB1
212
137
-
Glu
TTC
[ENA]
¢þ
>WENV170684236
LFRM01028031
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5169
5094
-
Glu
TTC
[ENA]
¢þ
>WENV170721430
LSQX01190164
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
51429
51504
+
Glu
TTC
[ENA]
¢þ
>WENV170970014
MTKW01049112
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
208
283
+
Glu
TTC
[ENA]
¢þ
>WENV170970018
MTKW01049113
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2017
2092
+
Glu
TTC
[ENA]
¢þ
>C181166330
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
2174999
2175074
+
Glu
TTC
-
¡û
>C181166344
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
2624910
2624835
-
Glu
TTC
-
¡û
>C181166358
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
251920
251845
-
Glu
TTC
-
¡û
>C181166404
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
2217647
2217722
+
Glu
TTC
-
¡û
>C181166418
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
2637909
2637834
-
Glu
TTC
-
¡û
>C181166432
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
252563
252488
-
Glu
TTC
-
¡û
>W09105150
AAOP01000009
Bacillota
Desulforamulus reducens MI-1 [AAOP]
68821
68746
-
Glu
TTC
[ENA]
¡û
>W09105158
AAOP01000012
Bacillota
Desulforamulus reducens MI-1 [AAOP]
234
309
+
Glu
TTC
[ENA]
¡û
>W09105170
AAOP01000032
Bacillota
Desulforamulus reducens MI-1 [AAOP]
37951
38026
+
Glu
TTC
[ENA]
¡û
>W09135925
BAAC01000171
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
30601
30676
+
Glu
TTC
[ENA]
¡û
>W141779325
JONT01000001
Bacillota
Desulfofalx alkaliphila DSM 12257 [JONT]
204855
204930
+
Glu
TTC
[ENA]
¡û
>W141779340
JONT01000003
Bacillota
Desulfofalx alkaliphila DSM 12257 [JONT]
147238
147163
-
Glu
TTC
[ENA]
¡û
>W1910004750
AWQQ01000036
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
8862
8937
+
Glu
TTC
[ENA]
¡û
>W1910004803
AWQQ01000162
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
2423
2498
+
Glu
TTC
[ENA]
¡û
>W1910004962
AWVY01000035
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
31331
31406
+
Glu
TTC
[ENA]
¡û
>W1911661960
QFFZ01000013
Bacillota
Pelotomaculum propionicicum MGP [QFFZ]
42401
42476
+
Glu
TTC
[ENA]
¡û
>W1911662029
QFGA01000001
Bacillota
Pelotomaculum schinkii HH [QFGA]
760333
760258
-
Glu
TTC
[ENA]
¡û
>W1911662070
QFGB01000023
Bacillota
Pelotomaculum sp. FP [QFGB]
29352
29427
+
Glu
TTC
[ENA]
¡û
>ENV09001728
ACQI01003833
Hydrothermal vent metagenome LCHCB.C1
452
377
-
Glu
TTC
[ENA]
¡û
>ENV09001835
ACQI01013294
Hydrothermal vent metagenome LCHCB.C1
108
183
+
Glu
TTC
[ENA]
¡û
>C10113255
CP002028
Bacillota
Thermincola potens JR [CP002028]
3094691
3094616
-
Glu
TTC
[Ensembl]
¡û
>C10113268
CP002028
Bacillota
Thermincola potens JR [CP002028]
2374847
2374772
-
Glu
TTC
[Ensembl]
¡û
>C11106949
CP002736
Bacillota
Desulfotomaculum nigrificans CO-1-SRB [CP002736]
1966499
1966424
-
Glu
TTC
[Ensembl]
¡û
>W1511564180
LADN01000020
Bacillota
Peptococcaceae bacterium BRH_c4a [LADN]
44441
44516
+
Glu
TTC
[ENA]
¡û
>W1511564220
LADO01000006
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
36250
36325
+
Glu
TTC
[ENA]
¡û
>W1511564241
LADO01000045
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
731
806
+
Glu
TTC
[ENA]
¡û
>W1511564249
LADO01000055
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
51533
51608
+
Glu
TTC
[ENA]
¡û
>W11150390
AEVP01000026
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
24092
24167
+
Glu
TTC
[ENA]
¡û
>W1511706105
LGTE01000003
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
188687
188612
-
Glu
TTC
[ENA]
¡û
>W1511706112
LGTE01000009
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
50142
50217
+
Glu
TTC
[ENA]
¡û
>W1610605490
LFSA01000010
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
5169
5094
-
Glu
TTC
[ENA]
¡û
>W1610614097
LGGS01000075
Bacillota
Pelotomaculum thermopropionicum [LGGS]
212
137
-
Glu
TTC
[ENA]
¡û
>W1710084305
BDLQ01000004
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
1771
1696
-
Glu
TTC
[ENA]
¡û
>W1710084312
BDLQ01000016
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
13670
13745
+
Glu
TTC
[ENA]
¡û
>W1710084349
BDLQ01000058
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
64154
64229
+
Glu
TTC
[ENA]
¡û
>W1710084384
BDLR01000034
Bacillota
Carboxydocella sp. JDF658 [BDLR]
25587
25512
-
Glu
TTC
[ENA]
¡û
>W1710084395
BDLR01000037
Bacillota
Carboxydocella sp. JDF658 [BDLR]
13661
13736
+
Glu
TTC
[ENA]
¡û
>W1710084419
BDLR01000085
Bacillota
Carboxydocella sp. JDF658 [BDLR]
1795
1720
-
Glu
TTC
[ENA]
¡û
>W1710586450
FQXF01000008
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
43608
43683
+
Glu
TTC
[ENA]
¡û
>W1710586462
FQXF01000012
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [FQXF]
85357
85282
-
Glu
TTC
[ENA]
¡û
>W1710590053
FRAR01000016
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
58231
58306
+
Glu
TTC
[ENA]
¡û
>W1710590066
FRAR01000024
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
77599
77674
+
Glu
TTC
[ENA]
¡û
>W1710601639
FUXM01000004
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
97949
98024
+
Glu
TTC
[ENA]
¡û
>W1710601685
FUXM01000061
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
694
619
-
Glu
TTC
[ENA]
¡û
>W1710601696
FUXM01000079
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
244
169
-
Glu
TTC
[ENA]
¡û
>W1710726777
LFSA01000010
Bacillota
Pelotomaculum sp. DTU098 [LFSA]
5169
5094
-
Glu
TTC
[ENA]
¡û
>W1710735180
LGGS01000075
Bacillota
Pelotomaculum thermopropionicum [LGGS]
212
137
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK