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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288148 (120 seq.)
>W1711091011
LTBB01000016
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
25090
25015
-
Ala
TGC
[ENA]
¡û
>W1711091021
LTBB01000020
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
12207
12132
-
Ala
TGC
[ENA]
¡û
>W1711091045
LTBB01000027
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
612
537
-
Ala
TGC
[ENA]
¡û
>W1711091049
LTBB01000029
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
757
682
-
Ala
TGC
[ENA]
¡û
>W1711091064
LTBB01000035
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
752
827
+
Ala
TGC
[ENA]
¡û
>W1711091066
LTBB01000039
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
612
537
-
Ala
TGC
[ENA]
¡û
>W1711091068
LTBB01000056
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
199
274
+
Ala
TGC
[ENA]
¡û
>W131092129
AOIF01000001
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
378
453
+
Ala
TGC
[ENA]
¡û
>W131092174
AOIF01000159
Bacillota
Clostridium saccharoperbutylacetonicum N1-4(HMT) [AOIF]
12389
12314
-
Ala
TGC
[ENA]
¡û
>W131232693
AUJL01000022
Bacillota
Clostridium cadaveris AGR2141 [AUJL]
584
659
+
Ala
TGC
[ENA]
¡û
>W131232722
AUJL01000041
Bacillota
Clostridium cadaveris AGR2141 [AUJL]
615
690
+
Ala
TGC
[ENA]
¡û
>W1711902974
MZGV01000091
Bacillota
Clostridium oryzae [MZGV]
959
884
-
Ala
TGC
[ENA]
¡û
>W1711902980
MZGV01000158
Bacillota
Clostridium oryzae [MZGV]
1213
1138
-
Ala
TGC
[ENA]
¡û
>W1711902981
MZGV01000167
Bacillota
Clostridium oryzae [MZGV]
227
302
+
Ala
TGC
[ENA]
¡û
>C171077661
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
267240
267315
+
Ala
TGC
-
¡û
>C007097
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
38326
38251
-
Ala
TGC
[Ensembl]
¡û
>w025885
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2153369
2153446
+
Ala
TGC
[ENA]
¡û
>W141039522
ALXI01000068
Bacillota
Clostridium sp. Maddingley MBC34-26 [ALXI]
107
32
-
Ala
TGC
[ENA]
¡û
>WENV180625152
OCQJ01000916
[OCQJ] human gut metagenome; human gut
249
174
-
Ala
TGC
[ENA]
¢þ
>W141063549
APJA01000032
Bacillota
Clostridium intestinale URNW [APJA]
88984
88909
-
Ala
TGC
[ENA]
¡û
>WENV180711970
ODFR01005872
[ODFR] human metagenome; G_DNA_R_Retroauricular crease
393
318
-
Ala
TGC
[ENA]
¢þ
>WENV180838957
ODKH01002684
[ODKH] human metagenome; G_DNA_Anterior nares
106
31
-
Ala
TGC
[ENA]
¢þ
>W141082944
AUPA01000080
Bacillota
Clostridium sp. BL8 [AUPA]
949
1024
+
Ala
TGC
[ENA]
¡û
>WENV180855637
ODKY01000449
[ODKY] human metagenome; G_DNA_R_Retroauricular crease
152
227
+
Ala
TGC
[ENA]
¢þ
>WENV180857601
ODLB01010775
[ODLB] human metagenome; G_DNA_L_Retroauricular crease
393
318
-
Ala
TGC
[ENA]
¢þ
>WENV180966839
ODUS01000003
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
137
212
+
Ala
TGC
[ENA]
¢þ
>WENV180967039
ODUS01007867
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
204
279
+
Ala
TGC
[ENA]
¢þ
>WENV181007065
ODWC01013586
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
435
360
-
Ala
TGC
[ENA]
¢þ
>WENV181007073
ODWC01017410
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
270
345
+
Ala
TGC
[ENA]
¢þ
>C08003360
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
173610
173685
+
Ala
TGC
[Ensembl]
¡û
>WENV182438914
OIJP01003012
[OIJP] human gut metagenome; human gut
424
349
-
Ala
TGC
[ENA]
¢þ
>WENV182439948
OIJW01004547
[OIJW] human gut metagenome; human gut
164
239
+
Ala
TGC
[ENA]
¢þ
>WENV182442990
OIKI01004738
[OIKI] human gut metagenome; human gut
164
239
+
Ala
TGC
[ENA]
¢þ
>WENV182443491
OIKN01000665
[OIKN] human gut metagenome; human gut
189
114
-
Ala
TGC
[ENA]
¢þ
>WENV182448962
OILN01001896
[OILN] human gut metagenome; human gut
1069
994
-
Ala
TGC
[ENA]
¢þ
>WENV182621853
OJKJ01001428
[OJKJ] metagenome; faeces
2346
2271
-
Ala
TGC
[ENA]
¢þ
>WENV182640386
OJLB01006527
[OJLB] metagenome; surface
1407
1332
-
Ala
TGC
[ENA]
¢þ
>WENV182642045
OJLL01000339
[OJLL] metagenome; surface
157
232
+
Ala
TGC
[ENA]
¢þ
>WENV182643228
OJLS01008724
[OJLS] metagenome; surface
96
171
+
Ala
TGC
[ENA]
¢þ
>W141265773
CCFK01000013
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
112746
112671
-
Ala
TGC
[ENA]
¡û
>W141265775
CCFK01000013
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
111163
111088
-
Ala
TGC
[ENA]
¡û
>W141265822
CCFK01000015
Bacillota
Clostridium amazonitimonense LF2 [CCFK]
163746
163821
+
Ala
TGC
[ENA]
¡û
>W141267371
CCNN01000013
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
112746
112671
-
Ala
TGC
[ENA]
¡û
>W141267373
CCNN01000013
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
111163
111088
-
Ala
TGC
[ENA]
¡û
>W141267420
CCNN01000015
Bacillota
Clostridium amazonitimonense LF2 [CCNN]
163746
163821
+
Ala
TGC
[ENA]
¡û
>WENV182849700
OKKT01000801
[OKKT] human gut metagenome; human gut
156
231
+
Ala
TGC
[ENA]
¢þ
>WENV182992799
OLAV01004158
[OLAV] human gut metagenome; human gut
304
229
-
Ala
TGC
[ENA]
¢þ
>WENV183090736
OLKE01000473
[OLKE] metagenome; surface
2526
2451
-
Ala
TGC
[ENA]
¢þ
>WENV170970132
MTKW01054103
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
35
110
+
Ala
TGC
[ENA]
¢þ
>C181159875
CP027782
Bacillota
Clostridium tetani Mfbjulcb2 [CP027782]
2671223
2671148
-
Ala
TGC
-
¡û
>C191184235
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
14642
14717
+
Ala
TGC
-
¡û
>C191184245
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
237685
237760
+
Ala
TGC
-
¡û
>C191184265
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
3474232
3474157
-
Ala
TGC
-
¡û
>C191184306
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2791940
2791865
-
Ala
TGC
-
¡û
>W141806545
JPMD01000096
Bacillota
Clostridium sulfidigenes [JPMD]
265
340
+
Ala
TGC
[ENA]
¡û
>C09103273
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
173610
173685
+
Ala
TGC
[Ensembl]
¡û
>W1910213068
FMJL01000092
Bacillota
Clostridium sp. N3C [FMJL]
156
81
-
Ala
TGC
[ENA]
¡û
>W1911493747
OBJM01000004
Bacillota
Clostridium cadaveris LH052 [OBJM]
166197
166122
-
Ala
TGC
[ENA]
¡û
>W1911493792
OBJM01000014
Bacillota
Clostridium cadaveris LH052 [OBJM]
96301
96376
+
Ala
TGC
[ENA]
¡û
>W1911493819
OBJM01000035
Bacillota
Clostridium cadaveris LH052 [OBJM]
11768
11693
-
Ala
TGC
[ENA]
¡û
>W1911694073
QMAN01000019
Bacillota
Clostridium tetani 1337 [QMAN]
28011
27936
-
Ala
TGC
[ENA]
¡û
>W1911694146
QMAO01000014
Bacillota
Clostridium tetani 778.17 [QMAO]
250
325
+
Ala
TGC
[ENA]
¡û
>W1911694159
QMAO01000027
Bacillota
Clostridium tetani 778.17 [QMAO]
445
520
+
Ala
TGC
[ENA]
¡û
>W1911694197
QMAP01000018
Bacillota
Clostridium tetani 2017.061 [QMAP]
28860
28785
-
Ala
TGC
[ENA]
¡û
>W1911694233
QMAQ01000028
Bacillota
Clostridium tetani 202.15 [QMAQ]
28077
28002
-
Ala
TGC
[ENA]
¡û
>W1911694287
QMAR01000012
Bacillota
Clostridium tetani 157.15 [QMAR]
28083
28008
-
Ala
TGC
[ENA]
¡û
>W1911694381
QMAS01000024
Bacillota
Clostridium tetani 89.12 [QMAS]
28077
28002
-
Ala
TGC
[ENA]
¡û
>W1911694443
QMAT01000023
Bacillota
Clostridium tetani 46.1.08 [QMAT]
28077
28002
-
Ala
TGC
[ENA]
¡û
>W1911694463
QMAU01000009
Bacillota
Clostridium tetani 63.05 [QMAU]
28812
28737
-
Ala
TGC
[ENA]
¡û
>W1911694513
QMAU01000052
Bacillota
Clostridium tetani 63.05 [QMAU]
234
159
-
Ala
TGC
[ENA]
¡û
>W1911694556
QMAV01000027
Bacillota
Clostridium tetani 358.99 [QMAV]
28083
28008
-
Ala
TGC
[ENA]
¡û
>W1911694611
QMAW01000023
Bacillota
Clostridium tetani 75.97 [QMAW]
28077
28002
-
Ala
TGC
[ENA]
¡û
>W1911694671
QMAX01000020
Bacillota
Clostridium tetani 407.86 [QMAX]
28077
28002
-
Ala
TGC
[ENA]
¡û
>W1911694734
QMAY01000017
Bacillota
Clostridium tetani 641.84 [QMAY]
28077
28002
-
Ala
TGC
[ENA]
¡û
>W1911694762
QMAZ01000013
Bacillota
Clostridium tetani 132CV [QMAZ]
180
255
+
Ala
TGC
[ENA]
¡û
>W1911694830
QMBA01000010
Bacillota
Clostridium tetani 3582 [QMBA]
28081
28006
-
Ala
TGC
[ENA]
¡û
>W1911694880
QMBB01000006
Bacillota
Clostridium tetani TMB2 [QMBB]
37136
37061
-
Ala
TGC
[ENA]
¡û
>W1911694971
QMBC01000018
Bacillota
Clostridium tetani COR1 [QMBC]
27739
27664
-
Ala
TGC
[ENA]
¡û
>W1911695048
QMBD01000021
Bacillota
Clostridium tetani B4 [QMBD]
28082
28007
-
Ala
TGC
[ENA]
¡û
>W1911695061
QMBE01000008
Bacillota
Clostridium tetani 512-15 [QMBE]
310
385
+
Ala
TGC
[ENA]
¡û
>W1911695156
QMBF01000016
Bacillota
Clostridium tetani 329 [QMBF]
27739
27664
-
Ala
TGC
[ENA]
¡û
>W1911695220
QMBG01000025
Bacillota
Clostridium tetani 1240 [QMBG]
28082
28007
-
Ala
TGC
[ENA]
¡û
>W1911695251
QMBH01000008
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
28056
27981
-
Ala
TGC
[ENA]
¡û
>W1911695303
QMBI01000008
Bacillota
Clostridium tetani 1586-U1 [QMBI]
28056
27981
-
Ala
TGC
[ENA]
¡û
>W1911695387
QMBJ01000021
Bacillota
Clostridium tetani 4784A [QMBJ]
28064
27989
-
Ala
TGC
[ENA]
¡û
>W1911695450
QMBK01000020
Bacillota
Clostridium tetani Strain 3 [QMBK]
28012
27937
-
Ala
TGC
[ENA]
¡û
>W1911695498
QMBL01000016
Bacillota
Clostridium tetani Harvard [QMBL]
27962
27887
-
Ala
TGC
[ENA]
¡û
>W1911696393
QMDR01000023
Bacillota
Clostridium tetani 3483 [QMDR]
28812
28737
-
Ala
TGC
[ENA]
¡û
>W1911696438
QMDR01000062
Bacillota
Clostridium tetani 3483 [QMDR]
325
250
-
Ala
TGC
[ENA]
¡û
>W1810186218
PKGS01000013
Bacillota
Anaerococcus octavius UMB0119 [PKGS]
17993
18068
+
Ala
TGC
[ENA]
¡û
>W1810367381
PVXN01000035
Bacillota
Clostridium thermopalmarium DSM 5974 [PVXN]
4929
4854
-
Ala
TGC
[ENA]
¡û
>W1810367435
PVXN01000073
Bacillota
Clostridium thermopalmarium DSM 5974 [PVXN]
11897
11822
-
Ala
TGC
[ENA]
¡û
>W1810579466
QEQN01000047
Bacillota
Clostridium thermopalmarium DSM 5974 [QEQN]
246
321
+
Ala
TGC
[ENA]
¡û
>W1810579468
QEQN01000048
Bacillota
Clostridium thermopalmarium DSM 5974 [QEQN]
5132
5057
-
Ala
TGC
[ENA]
¡û
>C151100884
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
2802275
2802200
-
Ala
TGC
[Ensembl]
¡û
>C151100903
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
39201
39126
-
Ala
TGC
[Ensembl]
¡û
>W1510755105
CYSK01000004
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
771
696
-
Ala
TGC
[ENA]
¡û
>W1510755117
CYSK01000010
Bacillota
Desnuesiella massiliensis mt10 [CYSK]
3214
3289
+
Ala
TGC
[ENA]
¡û
>W1511345200
JRGG01000013
Bacillota
Clostridium tetani C2 [JRGG]
104
179
+
Ala
TGC
[ENA]
¡û
>W1511345252
JRGH01000017
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
27922
27847
-
Ala
TGC
[ENA]
¡û
>W1511345297
JRGI01000009
Bacillota
Clostridium tetani ATCC 453 [JRGI]
106
181
+
Ala
TGC
[ENA]
¡û
>W1511345354
JRGJ01000033
Bacillota
Clostridium tetani ATCC 19406 [JRGJ]
27898
27823
-
Ala
TGC
[ENA]
¡û
>W1511388474
JSWC01000002
Bacillota
Clostridium tetani CN655 [JSWC]
27940
27865
-
Ala
TGC
[ENA]
¡û
>W1511388502
JSWD01000004
Bacillota
Clostridium tetani 184.08 [JSWD]
3992
3917
-
Ala
TGC
[ENA]
¡û
>W1511480260
JWIX01000077
Bacillota
Clostridium tetani A [JWIX]
27948
27873
-
Ala
TGC
[ENA]
¡û
>W1511595658
LBNB01000001
Bacillota
Clostridium tetani ATCC 454 [LBNB]
81
156
+
Ala
TGC
[ENA]
¡û
>C131012892
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
14512
14587
+
Ala
TGC
[Ensembl]
¡û
>C131012955
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
6223282
6223207
-
Ala
TGC
[Ensembl]
¡û
>W1610925210
LTBB01000016
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
25090
25015
-
Ala
TGC
[ENA]
¡û
>W1610925220
LTBB01000020
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
12207
12132
-
Ala
TGC
[ENA]
¡û
>W1610925244
LTBB01000027
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
612
537
-
Ala
TGC
[ENA]
¡û
>W1610925248
LTBB01000029
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
757
682
-
Ala
TGC
[ENA]
¡û
>W1610925263
LTBB01000035
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
752
827
+
Ala
TGC
[ENA]
¡û
>W1610925265
LTBB01000039
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
612
537
-
Ala
TGC
[ENA]
¡û
>W1610925267
LTBB01000056
Bacillota
Clostridium colicanis DSM 13634 [LTBB]
199
274
+
Ala
TGC
[ENA]
¡û
>W1710561477
FOOE01000032
Bacillota
Clostridium cadaveris [FOOE]
33193
33118
-
Ala
TGC
[ENA]
¡û
>W1710561488
FOOE01000044
Bacillota
Clostridium cadaveris [FOOE]
174
249
+
Ala
TGC
[ENA]
¡û
>W1710587165
FQXU01000012
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
148627
148552
-
Ala
TGC
[ENA]
¡û
>W1710588724
FQZO01000014
Bacillota
Clostridium amylolyticum [FQZO]
400
475
+
Ala
TGC
[ENA]
¡û
>W1710600774
FUWT01000024
Bacillota
Clostridium tetani [FUWT]
28153
28078
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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