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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288474 (40 seq.)
>C171038969
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
780452
780528
+
Ile
GAT
-
¡û
>C171038971
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
786060
786136
+
Ile
GAT
-
¡û
>C171038973
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
791666
791742
+
Ile
GAT
-
¡û
>C171038975
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
797274
797350
+
Ile
GAT
-
¡û
>C171039164
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
2833928
2834004
+
Ile
GAT
-
¡û
>C171039166
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
2839480
2839556
+
Ile
GAT
-
¡û
>C171039168
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
2845013
2845089
+
Ile
GAT
-
¡û
>C015932
CP000142
Thermodesulfobacteriota
Syntrophotalea carbinolica DSM 2380 [CP000142]
2755992
2755916
-
Ile
GAT
[Ensembl]
¡û
>C015934
CP000142
Thermodesulfobacteriota
Syntrophotalea carbinolica DSM 2380 [CP000142]
2750410
2750334
-
Ile
GAT
[Ensembl]
¡û
>WENV180095688
MTBK01082866
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
271
347
+
Ile
GAT
[ENA]
¢þ
>WENV180292737
OBIV01599902
[OBIV] soil metagenome; Clay
155
231
+
Ile
GAT
[ENA]
¢þ
>WENV180346044
OBLN01021884
[OBLN] sediment metagenome; sediment
799
723
-
Ile
GAT
[ENA]
¢þ
>WENV181164514
OEIR01207920
[OEIR] soil metagenome; soil
101
25
-
Ile
GAT
[ENA]
¢þ
>WENV181286346
OFGV01021450
[OFGV] soil metagenome; Clay
398
322
-
Ile
GAT
[ENA]
¢þ
>WENV181286568
OFGW01005449
[OFGW] soil metagenome; Clay
590
666
+
Ile
GAT
[ENA]
¢þ
>WENV181293507
OFHG01005842
[OFHG] soil metagenome; Clay
959
1035
+
Ile
GAT
[ENA]
¢þ
>WENV181294453
OFHH01002880
[OFHH] soil metagenome; Clay
2532
2456
-
Ile
GAT
[ENA]
¢þ
>WENV181296879
OFHK01001570
[OFHK] soil metagenome; Clay
5116
5040
-
Ile
GAT
[ENA]
¢þ
>WENV181298305
OFHL01074322
[OFHL] soil metagenome; Clay
342
418
+
Ile
GAT
[ENA]
¢þ
>WENV181412514
OGCK01001061
[OGCK] hot springs metagenome; hot spring sediment
431
507
+
Ile
GAT
[ENA]
¢þ
>WENV183514160
OMKS01012700
[OMKS] sediment metagenome; hot spring sediment
2183
2107
-
Ile
GAT
[ENA]
¢þ
>WENV170006072
AMQJ01022951
[AMQJ] sediment metagenome; subsurface aquifer sediment
3305
3229
-
Ile
GAT
[ENA]
¢þ
>WENV170007833
AMWB02160156
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1944
1868
-
Ile
GAT
[ENA]
¢þ
>WENV170657680
JTFP01009220
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
836
760
-
Ile
GAT
[ENA]
¢þ
>WENV170657869
JTFP01027485
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
285
209
-
Ile
GAT
[ENA]
¢þ
>WENV170692343
LGOV01003783
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
2524
2448
-
Ile
GAT
[ENA]
¢þ
>WENV170694232
LGVD01023691
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
1099
1023
-
Ile
GAT
[ENA]
¢þ
>WENV170696800
LGVF01050564
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2266
2190
-
Ile
GAT
[ENA]
¢þ
>W1910230092
FOJJ01000040
Thermodesulfobacteriota
Desulfuromonas acetexigens [FOJJ]
145303
145227
-
Ile
GAT
[ENA]
¡û
>W1910230094
FOJJ01000040
Thermodesulfobacteriota
Desulfuromonas acetexigens [FOJJ]
139657
139581
-
Ile
GAT
[ENA]
¡û
>C151066507
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
2622268
2622192
-
Ile
GAT
[Ensembl]
¡û
>C151066509
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
2616593
2616517
-
Ile
GAT
[Ensembl]
¡û
>C151066511
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
2610918
2610842
-
Ile
GAT
[Ensembl]
¡û
>C151072486
CP010802
Thermodesulfobacteriota
Desulfuromonas soudanensis WTL [CP010802]
2972465
2972389
-
Ile
GAT
-
¡û
>C151072488
CP010802
Thermodesulfobacteriota
Desulfuromonas soudanensis WTL [CP010802]
2966903
2966827
-
Ile
GAT
-
¡û
>W1510006470
BAZF01000044
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
2003
2079
+
Ile
GAT
[ENA]
¡û
>W1511480374
JWJD01000002
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus DSM 17813 [JWJD]
476501
476425
-
Ile
GAT
[ENA]
¡û
>C161082933
CP015080
Thermodesulfobacteriota
Desulfuromonas sp. DDH964 [CP015080]
2854395
2854319
-
Ile
GAT
[Ensembl]
¡û
>C161082935
CP015080
Thermodesulfobacteriota
Desulfuromonas sp. DDH964 [CP015080]
2848835
2848759
-
Ile
GAT
[Ensembl]
¡û
>W1710521925
FNGU01000001
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus [FNGU]
491494
491570
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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