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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288544 (18 seq.)
>W141073728
ASSJ01000063
Cyanobacteriota
Rubidibacter lacunae KORDI 51-2 [ASSJ]
3515
3442
-
Ala
TGC
[ENA]
¡û
>WENV183703534
PDVJ01021261
[PDVJ] alkali sediment metagenome; glacial lake sediment
999
1072
+
Ala
TGC
[ENA]
¢þ
>WENV183748543
PPFU01051181
[PPFU] hypolithon metagenome; Antarctic Hypolithon
215
142
-
Ala
TGC
[ENA]
¢þ
>WENV170002209
AGSF01000749
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
3598
3525
-
Ala
TGC
[ENA]
¢þ
>WENV170002259
AGSF01001637
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
1267
1340
+
Ala
TGC
[ENA]
¢þ
>WENV170002305
AGSF01008803
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
525
598
+
Ala
TGC
[ENA]
¢þ
>WENV170956430
MJUP01002392
[MJUP] soil metagenome; viral particles from soil sample MGM
192
119
-
Ala
TGC
[ENA]
¢þ
>WENV170991323
MWWA01164031
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
300
227
-
Ala
TGC
[ENA]
¢þ
>W1911426124
NXIB02000214
Cyanobacteriota
Tychonema bourrellyi FEM_GT703 [NXIB]
3405
3332
-
Ala
TGC
[ENA]
¡û
>W1810366370
PVWI01000192
Cyanobacteriota
filamentous cyanobacterium Phorm 6 [PVWI]
11448
11375
-
Ala
TGC
[ENA]
¡û
>W11164254
AFJC01000029
Cyanobacteriota
Microcoleus vaginatus FGP-2 [AFJC]
16040
16113
+
Ala
TGC
[ENA]
¡û
>C131010366
CP003944
Cyanobacteriota
Dactylococcopsis salina PCC 8305 [CP003944]
2464921
2464993
+
Ala
TGC
[Ensembl]
¡û
>C131010377
CP003944
Cyanobacteriota
Dactylococcopsis salina PCC 8305 [CP003944]
3050022
3049950
-
Ala
TGC
[Ensembl]
¡û
>C131010418
CP003945
Cyanobacteriota
Halothece sp. PCC 7418 [CP003945]
3374005
3373933
-
Ala
TGC
[Ensembl]
¡û
>C131010435
CP003945
Cyanobacteriota
Halothece sp. PCC 7418 [CP003945]
181982
181910
-
Ala
TGC
[Ensembl]
¡û
>C131004757
CP003614
Cyanobacteriota
Oscillatoria nigro-viridis PCC 7112 [CP003614]
568311
568384
+
Ala
TGC
[Ensembl]
¡û
>C131004788
CP003614
Cyanobacteriota
Oscillatoria nigro-viridis PCC 7112 [CP003614]
4287869
4287796
-
Ala
TGC
[Ensembl]
¡û
>ENV000549
AF547631
Environmental sample from ENV division of INSDC
274
351
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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