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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288586 (13 seq.)
>C171036924
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
1017834
1017759
-
Glu
CTC
-
¡û
>WENV170601998
FUWD010208021
[FUWD] metagenome; unknown
683
608
-
Glu
CTC
[ENA]
¢þ
>C191178322
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
351774
351847
+
Glu
CTC
-
¡û
>C191178361
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
334326
334399
+
Glu
CTC
-
¡û
>C191178400
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
318105
318178
+
Glu
CTC
-
¡û
>W141766575
JOEB01000002
Actinomycetota
Mycetocola saprophilus [JOEB]
196192
196117
-
Glu
CTC
[ENA]
¡û
>W141766576
JOEB01000002
Actinomycetota
Mycetocola saprophilus [JOEB]
196038
195963
-
Glu
CTC
[ENA]
¡û
>W141766577
JOEB01000002
Actinomycetota
Mycetocola saprophilus [JOEB]
195843
195768
-
Glu
CTC
[ENA]
¡û
>W141766636
JOEC01000002
Actinomycetota
Mycetocola saprophilus [JOEC]
1245979
1246054
+
Glu
CTC
[ENA]
¡û
>W141766637
JOEC01000002
Actinomycetota
Mycetocola saprophilus [JOEC]
1246133
1246208
+
Glu
CTC
[ENA]
¡û
>W141766638
JOEC01000002
Actinomycetota
Mycetocola saprophilus [JOEC]
1246328
1246403
+
Glu
CTC
[ENA]
¡û
>C151025289
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
1075995
1075920
-
Glu
CTC
[Ensembl]
¡û
>WENV057868
AACY023309329
Marine microbial communities from Global Ocean Sampling (GOS)
379
304
-
Glu
CTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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