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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288672 (55 seq.)
>W131036291
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
3477026
3477099
+
His
GTG
[ENA]
¡û
>W131063288
ANKO01000124
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
14726
14799
+
His
GTG
[ENA]
¡û
>W1711577084
MNPM01000006
Cyanobacteriota
Mastigocladus laminosus 74 [MNPM]
145246
145173
-
His
GTG
[ENA]
¡û
>W1711979762
NDGV01000036
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
13086
13013
-
His
GTG
[ENA]
¡û
>C171000056
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
2643098
2643025
-
His
GTG
-
¡û
>C171000119
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
2643098
2643025
-
His
GTG
-
¡û
>C171097566
CP019636
Cyanobacteriota
Nostocales cyanobacterium HT-58-2 [CP019636]
951753
951680
-
His
GTG
-
¡û
>W131036490
ALVS01000067
Cyanobacteriota
Fischerella sp. PCC 9339 [ALVS]
494748
494821
+
His
GTG
[ENA]
¡û
>WENV180037363
FVAA010948742
[FVAA] soil metagenome; Soil
737
810
+
His
GTG
[ENA]
¢þ
>W141004278
AFXD01000003
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
420565
420492
-
His
GTG
[ENA]
¡û
>W141021257
AJLJ01000167
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
1748
1821
+
His
GTG
[ENA]
¡û
>W141038515
ALVX01000023
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
98263
98336
+
His
GTG
[ENA]
¡û
>W141067395
ASAK01000005
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
1616739
1616812
+
His
GTG
[ENA]
¡û
>W141096694
AVFS01000009
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
1062
1135
+
His
GTG
[ENA]
¡û
>W141096762
AVFT01000149
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
1118
1191
+
His
GTG
[ENA]
¡û
>W141096800
AVFU01000169
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
1083
1156
+
His
GTG
[ENA]
¡û
>W141096836
AVFV01000223
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
1022
1095
+
His
GTG
[ENA]
¡û
>W141096839
AVFW01000019
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
1050
1123
+
His
GTG
[ENA]
¡û
>W141096894
AVFX01000057
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
5576
5503
-
His
GTG
[ENA]
¡û
>W141096944
AVFY01000130
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
5587
5514
-
His
GTG
[ENA]
¡û
>W141096945
AVFZ01000001
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
3433
3360
-
His
GTG
[ENA]
¡û
>W141242767
CAIS01000911
Cyanobacteriota
Richelia intracellularis HM01 [CAIS]
7045
6972
-
His
GTG
[ENA]
¡û
>W141242889
CAIY01000080
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
87114
87187
+
His
GTG
[ENA]
¡û
>W141260246
CBZS010000008
Cyanobacteriota
Richelia intracellularis [CBZS]
365
292
-
His
GTG
[ENA]
¡û
>WENV170002187
AGSF01000049
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
2499
2572
+
His
GTG
[ENA]
¢þ
>WENV170002251
AGSF01001470
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
2499
2572
+
His
GTG
[ENA]
¢þ
>WENV170640170
JFJP01014034
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1259
1332
+
His
GTG
[ENA]
¢þ
>C181004825
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
4290073
4290146
+
His
GTG
-
¡û
>C181169668
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
4289029
4289102
+
His
GTG
-
¡û
>C191000785
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
773162
773235
+
His
GTG
-
¡û
>W1910175489
BJCD01000097
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
2787
2714
-
His
GTG
[ENA]
¡û
>W1910194159
CZCS01000189
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
68478
68551
+
His
GTG
[ENA]
¡û
>W1910194188
CZCT02000086
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
39238
39165
-
His
GTG
[ENA]
¡û
>W1910194313
CZDF01000132
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
395998
395925
-
His
GTG
[ENA]
¡û
>W1910842088
NAPS01000002
Cyanobacteriota
Westiellopsis prolifica IICB1 [NAPS]
988748
988821
+
His
GTG
[ENA]
¡û
>W1910909820
NGZU01000066
Cyanobacteriota
Fischerella thermalis WC114 [NGZU]
158746
158819
+
His
GTG
[ENA]
¡û
>W1910910225
NHAE01000190
Cyanobacteriota
Fischerella thermalis WC439 [NHAE]
61852
61925
+
His
GTG
[ENA]
¡û
>W1911070828
NMQD01002082
Cyanobacteriota
Fischerella thermalis CCMEE 5319 [NMQD]
1774
1847
+
His
GTG
[ENA]
¡û
>W1911178237
NQMD01001274
Cyanobacteriota
Fischerella thermalis CCMEE 5196 [NQMD]
719
792
+
His
GTG
[ENA]
¡û
>W1911638327
PVWL01000035
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
4851
4924
+
His
GTG
[ENA]
¡û
>W1911638362
PVWM01000054
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
4880
4953
+
His
GTG
[ENA]
¡û
>W1911641187
PYCI01000128
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
14334
14261
-
His
GTG
[ENA]
¡û
>W1911741969
QVFW01000001
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
695914
695841
-
His
GTG
[ENA]
¡û
>W1810366411
PVWK01000097
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
115622
115549
-
His
GTG
[ENA]
¡û
>W10111347
ADDH01000089
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
123971
124044
+
His
GTG
[ENA]
¡û
>W11114290
ADDH01000089
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
123971
124044
+
His
GTG
[ENA]
¡û
>W1511108022
JJML01000050
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
24323
24250
-
His
GTG
[ENA]
¡û
>W1511401809
JTJC01000086
Cyanobacteriota
Scytonema millei VB511283 [JTJC]
707991
707918
-
His
GTG
[ENA]
¡û
>W1511504561
JXIJ01000036
Cyanobacteriota
Mastigocladus laminosus UU774 [JXIJ]
145246
145173
-
His
GTG
[ENA]
¡û
>W1511585656
LAYT01000061
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
4153
4080
-
His
GTG
[ENA]
¡û
>W1511585677
LAYT01000252
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
29447
29520
+
His
GTG
[ENA]
¡û
>C161049388
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
1832356
1832429
+
His
GTG
-
¡û
>C161103172
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
1413393
1413320
-
His
GTG
-
¡û
>C131004527
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
5861276
5861203
-
His
GTG
[Ensembl]
¡û
>C131004971
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
2313768
2313841
+
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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