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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288755 (34 seq.)
>W131051975
AMYG01000031
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
30662
30737
+
Arg
CCG
[ENA]
¡û
>W131167577
ARDJ01000021
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
97758
97833
+
Arg
CCG
[ENA]
¡û
>w018972
AATV01000015
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
17518
17441
-
Arg
CCG
[ENA]
¡û
>w010174
AAKQ01000002
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
229587
229510
-
Arg
CCG
[ENA]
¡û
>W141092598
AVAF01000112
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
14181
14106
-
Arg
CCG
[ENA]
¡û
>WENV181226072
OFDK01000016
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
79886
79961
+
Arg
CCG
[ENA]
¢þ
>W141153131
AXDC01000016
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
2755
2830
+
Arg
CCG
[ENA]
¡û
>C08010980
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1073928
1073856
-
Arg
CCG
[Ensembl]
¡û
>C08011082
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
592356
592284
-
Arg
CCG
[Ensembl]
¡û
>W141276465
JADV01000003
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
160826
160751
-
Arg
CCG
[ENA]
¡û
>WENV170675621
LDZP01000164
[LDZP] terrestrial metagenome; oil reservoir sample I1
102480
102555
+
Arg
CCG
[ENA]
¢þ
>C191108116
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2528551
2528626
+
Arg
CCG
-
¡û
>W09133554
ACPF01000076
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
752
827
+
Arg
CCG
[ENA]
¡û
>W09134128
ACQZ01000009
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
41193
41268
+
Arg
CCG
[ENA]
¡û
>W09135050
ACVH01000020
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
39146
39071
-
Arg
CCG
[ENA]
¡û
>W09135151
ACVK01000012
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
42233
42308
+
Arg
CCG
[ENA]
¡û
>W09135838
ACXP01000002
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
70335
70260
-
Arg
CCG
[ENA]
¡û
>W10105910
ACXY01000001
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
42187
42112
-
Arg
CCG
[ENA]
¡û
>W10120478
ADXD01000016
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
38543
38618
+
Arg
CCG
[ENA]
¡û
>C10113390
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1818478
1818553
+
Arg
CCG
[Ensembl]
¡û
>C10113444
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1774123
1774198
+
Arg
CCG
[Ensembl]
¡û
>W11108233
ACXY01000001
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
42187
42112
-
Arg
CCG
[ENA]
¡û
>C11122509
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
587771
587696
-
Arg
CCG
[Ensembl]
¡û
>C11122717
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1840453
1840528
+
Arg
CCG
[Ensembl]
¡û
>C11123241
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1971280
1971355
+
Arg
CCG
[Ensembl]
¡û
>W11127087
ADXD01000016
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
38543
38618
+
Arg
CCG
[ENA]
¡û
>W11152639
AEYS01000004
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
98833
98908
+
Arg
CCG
[ENA]
¡û
>W1610043641
BAZY01000001
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
160446
160371
-
Arg
CCG
[ENA]
¡û
>W121068076
AJUD01000004
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
82385
82460
+
Arg
CCG
[ENA]
¡û
>W1610612253
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
102480
102555
+
Arg
CCG
[ENA]
¡û
>W1710040801
BAZY01000001
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
160446
160371
-
Arg
CCG
[ENA]
¡û
>W1710515346
FNBS01000108
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
3843
3768
-
Arg
CCG
[ENA]
¡û
>W1710560392
FONI01000057
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
12916
12841
-
Arg
CCG
[ENA]
¡û
>W1710733759
LGEO01000001
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
102480
102555
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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