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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288758 (69 seq.)
>W1710785300
LJHT01000002
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
11671
11595
-
Gln
TTG
[ENA]
¡û
>W1710785633
LJIA01000007
Betaproteobacteria
beta proteobacterium AAP99 [LJIA]
208100
208024
-
Gln
TTG
[ENA]
¡û
>W1710860014
LMCN01000040
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
17286
17362
+
Gln
TTG
[ENA]
¡û
>W1710861260
LMDM01000003
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
59099
59023
-
Gln
TTG
[ENA]
¡û
>W1710866428
LMHL01000016
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
57932
57856
-
Gln
TTG
[ENA]
¡û
>W1711259920
LYVQ01000145
Betaproteobacteria
Pelomonas sp. KK5 [LYVQ]
5278
5202
-
Gln
TTG
[ENA]
¡û
>W1712103025
NIOG01000004
Betaproteobacteria
Roseateles terrae [NIOG]
442893
442817
-
Gln
TTG
[ENA]
¡û
>W1712105735
NISI01000007
Betaproteobacteria
Roseateles puraquae [NISI]
319535
319459
-
Gln
TTG
[ENA]
¡û
>W131214618
ATUI01000010
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
152018
151942
-
Gln
TTG
[ENA]
¡û
>WENV180267187
OBEQ011824957
[OBEQ] groundwater metagenome; groundwater
313
389
+
Gln
TTG
[ENA]
¢þ
>WENV180284525
OBID01052084
[OBID] metagenome; sludge
421
497
+
Gln
TTG
[ENA]
¢þ
>WENV180354908
OBNE01031667
[OBNE] groundwater metagenome; groundwater
64
140
+
Gln
TTG
[ENA]
¢þ
>WENV180692712
OCZS010716062
[OCZS] soil metagenome; soil
105
181
+
Gln
TTG
[ENA]
¢þ
>WENV180731549
ODGW01002025
[ODGW] human metagenome; G_DNA_Supragingival plaque
1692
1768
+
Gln
TTG
[ENA]
¢þ
>WENV180751771
ODHS01153338
[ODHS] human metagenome; G_DNA_Supragingival plaque
242
166
-
Gln
TTG
[ENA]
¢þ
>WENV180814805
ODJO01057378
[ODJO] human metagenome; G_DNA_Supragingival plaque
29
105
+
Gln
TTG
[ENA]
¢þ
>WENV180833555
ODKC01095046
[ODKC] human metagenome; G_DNA_Supragingival plaque
218
142
-
Gln
TTG
[ENA]
¢þ
>WENV180835441
ODKE01003402
[ODKE] human metagenome; G_DNA_Supragingival plaque
1316
1240
-
Gln
TTG
[ENA]
¢þ
>WENV180934091
ODTR01022030
[ODTR] human metagenome; G_DNA_Supragingival plaque
211
135
-
Gln
TTG
[ENA]
¢þ
>WENV180938607
ODTX01004070
[ODTX] human metagenome; G_DNA_Supragingival plaque
1313
1237
-
Gln
TTG
[ENA]
¢þ
>WENV180981620
ODVE01037577
[ODVE] human metagenome; G_DNA_Supragingival plaque
884
808
-
Gln
TTG
[ENA]
¢þ
>WENV180983466
ODVF01013722
[ODVF] human metagenome; G_DNA_Supragingival plaque
692
768
+
Gln
TTG
[ENA]
¢þ
>WENV181049596
ODYD01000901
[ODYD] human metagenome; G_DNA_Supragingival plaque
9329
9253
-
Gln
TTG
[ENA]
¢þ
>WENV181070316
OEAE01000767
[OEAE] human metagenome; G_DNA_Supragingival plaque
4529
4453
-
Gln
TTG
[ENA]
¢þ
>WENV181081800
OEAS01389294
[OEAS] human metagenome; G_DNA_Supragingival plaque
168
92
-
Gln
TTG
[ENA]
¢þ
>WENV181138159
OEGJ01139442
[OEGJ] human metagenome; G_DNA_Supragingival plaque
226
150
-
Gln
TTG
[ENA]
¢þ
>WENV181171331
OEIV010199912
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
129
205
+
Gln
TTG
[ENA]
¢þ
>WENV181223033
OFDC01001326
[OFDC] hot springs metagenome; Water
3931
3855
-
Gln
TTG
[ENA]
¢þ
>WENV181364627
OFOZ01001892
[OFOZ] sediment metagenome; Lake sediment
188
264
+
Gln
TTG
[ENA]
¢þ
>WENV181378489
OFRB01011134
[OFRB] wastewater metagenome; Exp Tend CN 0WW
367
443
+
Gln
TTG
[ENA]
¢þ
>WENV181390261
OFRO01032712
[OFRO] wastewater metagenome; Exp Tend NO 10WW
660
584
-
Gln
TTG
[ENA]
¢þ
>WENV183746417
POYD01005477
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
515
439
-
Gln
TTG
[ENA]
¢þ
>WENV170000022
AERA01001055
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
29
105
+
Gln
TTG
[ENA]
¢þ
>WENV170010534
APMI01019694
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
591
667
+
Gln
TTG
[ENA]
¢þ
>WENV170551377
CXWJ01005966
[CXWJ] wastewater metagenome; activated sludge
9014
9090
+
Gln
TTG
[ENA]
¢þ
>WENV170551805
CXWJ01023969
[CXWJ] wastewater metagenome; activated sludge
11
87
+
Gln
TTG
[ENA]
¢þ
>WENV170552160
CXWJ01041977
[CXWJ] wastewater metagenome; activated sludge
11
87
+
Gln
TTG
[ENA]
¢þ
>WENV170552301
CXWJ01053815
[CXWJ] wastewater metagenome; activated sludge
112
36
-
Gln
TTG
[ENA]
¢þ
>WENV170554213
CXWK01054258
[CXWK] wastewater metagenome; activated sludge
1176
1100
-
Gln
TTG
[ENA]
¢þ
>WENV170558699
CXWL01085706
[CXWL] groundwater metagenome; biofilm material
14912
14988
+
Gln
TTG
[ENA]
¢þ
>WENV170651308
JRYF01006168
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
890
966
+
Gln
TTG
[ENA]
¢þ
>WENV170653508
JRYJ01003066
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
3097
3021
-
Gln
TTG
[ENA]
¢þ
>C181064534
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
2828670
2828746
+
Gln
TTG
-
¡û
>C191182082
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
1079228
1079152
-
Gln
TTG
-
¡û
>W1910699926
MESA01000031
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_63_20 [MESA]
148485
148409
-
Gln
TTG
[ENA]
¡û
>W1910700324
MESK01000051
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_99 [MESK]
25844
25920
+
Gln
TTG
[ENA]
¡û
>W1911502761
OEQA01000002
Betaproteobacteria
Ottowia massiliensis Marseille-P4747 [OEQA]
709865
709941
+
Gln
TTG
[ENA]
¡û
>W1911740739
QUSW01000005
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
461314
461238
-
Gln
TTG
[ENA]
¡û
>W1810081349
PEOG01000019
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
11776
11700
-
Gln
TTG
[ENA]
¡û
>W1810884636
QUMT01000003
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
100352
100428
+
Gln
TTG
[ENA]
¡û
>C151090620
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
1739473
1739397
-
Gln
TTG
-
¡û
>W1510021368
BBYR01000055
Betaproteobacteria
Piscinibacter sakaiensis 201-F6 [BBYR]
1984
1908
-
Gln
TTG
[ENA]
¡û
>WENV11100380
AERA01001055
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
29
105
+
Gln
TTG
[ENA]
¡û
>W1511433148
JUGZ01000018
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
56836
56760
-
Gln
TTG
[ENA]
¡û
>W1511433180
JUHA01000002
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
102277
102201
-
Gln
TTG
[ENA]
¡û
>W11150933
AEWG01000141
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
27402
27326
-
Gln
TTG
[ENA]
¡û
>C121001129
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
902729
902653
-
Gln
TTG
[Ensembl]
¡û
>C161060316
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
1234812
1234736
-
Gln
TTG
[Ensembl]
¡û
>W121060113
AJFF01000305
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
3862
3786
-
Gln
TTG
[ENA]
¡û
>W1610076227
BCYP01000001
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
235770
235694
-
Gln
TTG
[ENA]
¡û
>W1610649106
LJHT01000002
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
11671
11595
-
Gln
TTG
[ENA]
¡û
>W1610649439
LJIA01000007
Betaproteobacteria
beta proteobacterium AAP99 [LJIA]
208100
208024
-
Gln
TTG
[ENA]
¡û
>W1610722360
LMCN01000040
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
17286
17362
+
Gln
TTG
[ENA]
¡û
>W1610723606
LMDM01000003
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
59099
59023
-
Gln
TTG
[ENA]
¡û
>W1610728774
LMHL01000016
Betaproteobacteria
Rhizobacter sp. Root16D2 [LMHL]
57932
57856
-
Gln
TTG
[ENA]
¡û
>W1710074042
BCYP01000001
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
235770
235694
-
Gln
TTG
[ENA]
¡û
>W1710544491
FOAV01000014
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
92820
92744
-
Gln
TTG
[ENA]
¡û
>W1710575443
FOZE01000001
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
558443
558367
-
Gln
TTG
[ENA]
¡û
>W1710592644
FRCQ01000003
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
56711
56635
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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