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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288760 (39 seq.)
>W1711394632
MEQM01000085
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_56_24 [MEQM]
7009
6933
-
Arg
ACG
[ENA]
¡û
>W1711413606
MGWO01000007
Betaproteobacteria
Gallionellales bacterium GWA2_54_124 [MGWO]
969123
969047
-
Arg
ACG
[ENA]
¡û
>W1711413607
MGWO01000007
Betaproteobacteria
Gallionellales bacterium GWA2_54_124 [MGWO]
968963
968887
-
Arg
ACG
[ENA]
¡û
>W1711413796
MGWV01000180
Betaproteobacteria
Gallionellales bacterium RBG_16_57_15 [MGWV]
1372
1296
-
Arg
ACG
[ENA]
¡û
>W1711413836
MGXE01000064
Betaproteobacteria
Gallionellales bacterium RIFOXYD12_FULL_53_10 [MGXE]
10010
9934
-
Arg
ACG
[ENA]
¡û
>W1711413837
MGXE01000064
Betaproteobacteria
Gallionellales bacterium RIFOXYD12_FULL_53_10 [MGXE]
9850
9774
-
Arg
ACG
[ENA]
¡û
>W1711413858
MGXF01000087
Betaproteobacteria
Gallionellales bacterium RIFOXYD2_FULL_52_7 [MGXF]
1748
1824
+
Arg
ACG
[ENA]
¡û
>W131159974
AQWB01000044
Betaproteobacteria
Rhodocyclus sp. UW 659-1-F08 [AQWB]
3450
3526
+
Arg
ACG
[ENA]
¡û
>W131164430
ARAT01000122
Betaproteobacteria
Gallionella sp. SCGC AAA018-N21 [ARAT]
5251
5327
+
Arg
ACG
[ENA]
¡û
>C007484
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1943197
1943273
+
Arg
ACG
[Ensembl]
¡û
>C007485
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1943321
1943397
+
Arg
ACG
[Ensembl]
¡û
>WENV180038550
FZPZ01000001
[FZPZ] metagenome; underground water
20588
20512
-
Arg
ACG
[ENA]
¢þ
>WENV180267284
OBEQ011836765
[OBEQ] groundwater metagenome; groundwater
237
161
-
Arg
ACG
[ENA]
¢þ
>WENV180277108
OBHV01065534
[OBHV] metagenome; water
207
131
-
Arg
ACG
[ENA]
¢þ
>WENV180284000
OBID01009962
[OBID] metagenome; sludge
1470
1394
-
Arg
ACG
[ENA]
¢þ
>WENV180284317
OBID01029019
[OBID] metagenome; sludge
804
880
+
Arg
ACG
[ENA]
¢þ
>WENV180284318
OBID01029019
[OBID] metagenome; sludge
941
1017
+
Arg
ACG
[ENA]
¢þ
>WENV180299321
OBJC01000908
[OBJC] metagenome; water
1280
1356
+
Arg
ACG
[ENA]
¢þ
>WENV181144524
OEHO01031950
[OEHO] metagenome; unknown
69
145
+
Arg
ACG
[ENA]
¢þ
>WENV181189230
OEOF01010425
[OEOF] activated sludge metagenome; Activated Sludge
935
1011
+
Arg
ACG
[ENA]
¢þ
>WENV181365211
OFPL01000663
[OFPL] sediment metagenome; Lake sediment
8
84
+
Arg
ACG
[ENA]
¢þ
>WENV181372159
OFQW01023429
[OFQW] wastewater metagenome; Exp Tend NO 90WW
436
360
-
Arg
ACG
[ENA]
¢þ
>WENV181376016
OFQZ01012388
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
652
576
-
Arg
ACG
[ENA]
¢þ
>WENV181380279
OFRD01051605
[OFRD] wastewater metagenome; Exp Tend CN 100WW
438
362
-
Arg
ACG
[ENA]
¢þ
>WENV181380993
OFRE01018219
[OFRE] wastewater metagenome; Exp Tend NO 50WW
400
324
-
Arg
ACG
[ENA]
¢þ
>WENV181390203
OFRO01026411
[OFRO] wastewater metagenome; Exp Tend NO 10WW
746
822
+
Arg
ACG
[ENA]
¢þ
>WENV002015
AACY020056722
Marine microbial communities from Global Ocean Sampling (GOS)
417
495
+
Arg
ACG
[ENA]
>WENV170559228
CXWL01115148
[CXWL] groundwater metagenome; biofilm material
6319
6243
-
Arg
ACG
[ENA]
¢þ
>C191081678
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
1674755
1674679
-
Arg
ACG
-
¡û
>C191081679
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
1674615
1674539
-
Arg
ACG
-
¡û
>W09100859
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
350082
350158
+
Arg
ACG
[ENA]
¡û
>W09100860
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
350206
350282
+
Arg
ACG
[ENA]
¡û
>W09134309
ACSD01000017
Betaproteobacteria
Gallionella capsiferriformans ES-2 [ACSD]
2059
1983
-
Arg
ACG
[ENA]
¡û
>W09134310
ACSD01000017
Betaproteobacteria
Gallionella capsiferriformans ES-2 [ACSD]
1900
1824
-
Arg
ACG
[ENA]
¡û
>W1910128343
BHVT01000038
Betaproteobacteria
Sulfurirhabdus autotrophica BiS0 [BHVT]
2733
2657
-
Arg
ACG
[ENA]
¡û
>W1910730036
MHBU01000027
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
83140
83216
+
Arg
ACG
[ENA]
¡û
>ENV09001479
ABSR01015931
Freshwater sediment metagenome lwMethylamine_C1
479
403
-
Arg
ACG
[ENA]
¡û
>C10107115
CP002159
Betaproteobacteria
Gallionella capsiferriformans ES-2 [CP002159]
1811058
1811134
+
Arg
ACG
[Ensembl]
¡û
>C10107116
CP002159
Betaproteobacteria
Gallionella capsiferriformans ES-2 [CP002159]
1811217
1811293
+
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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