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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288840 (55 seq.)
>W1710866780
LMHT01000022
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
53050
53126
+
Pro
TGG
[ENA]
¡û
>W1710873827
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
267203
267127
-
Pro
TGG
[ENA]
¡û
>W1710876119
LMOY01000012
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
141928
142004
+
Pro
TGG
[ENA]
¡û
>W1711408015
MGLN01000144
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
21725
21801
+
Pro
TGG
[ENA]
¡û
>W1711501734
MKRY01000193
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
15041
15117
+
Pro
TGG
[ENA]
¡û
>W1711718095
MTHE01000001
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
466418
466342
-
Pro
TGG
[ENA]
¡û
>W1712106168
NIVP01000001
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
154048
154124
+
Pro
TGG
[ENA]
¡û
>W131052411
AMYY01000001
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
56282
56206
-
Pro
TGG
[ENA]
¡û
>W131221577
AUAO01000007
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
24699
24623
-
Pro
TGG
[ENA]
¡û
>WENV181170524
OEIV010054536
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
634
558
-
Pro
TGG
[ENA]
¢þ
>WENV181223563
OFDC01033443
[OFDC] hot springs metagenome; Water
132
56
-
Pro
TGG
[ENA]
¢þ
>WENV181227218
OFDN01003492
[OFDN] hot springs metagenome; Water
3965
4041
+
Pro
TGG
[ENA]
¢þ
>WENV181371042
OFQU01011163
[OFQU] wastewater metagenome; Exp Tend CN 90WW
590
666
+
Pro
TGG
[ENA]
¢þ
>WENV181371591
OFQV01021958
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
532
608
+
Pro
TGG
[ENA]
¢þ
>WENV181378465
OFRB01008024
[OFRB] wastewater metagenome; Exp Tend CN 0WW
381
305
-
Pro
TGG
[ENA]
¢þ
>WENV181381843
OFRF01016954
[OFRF] wastewater metagenome; Exp Tend CN 50WW
802
726
-
Pro
TGG
[ENA]
¢þ
>WENV181384321
OFRI01000161
[OFRI] wastewater metagenome; Exp Tend VB 90WW
14601
14677
+
Pro
TGG
[ENA]
¢þ
>WENV181400934
OFSF01033502
[OFSF] wastewater metagenome; Exp Tend VB 100WW
611
535
-
Pro
TGG
[ENA]
¢þ
>WENV181402452
OFTY01001757
[OFTY] sludge metagenome; sludge
2206
2130
-
Pro
TGG
[ENA]
¢þ
>W08010833
ABRU01000040
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
127677
127604
-
Pro
TGG
[ENA]
¡û
>WENV181732076
OGQD01009654
[OGQD] human gut metagenome; faeces
1408
1332
-
Pro
TGG
[ENA]
¢þ
>WENV170004178
AGTN01590245
[AGTN] bioreactor metagenome; poplar biomass
197
273
+
Pro
TGG
[ENA]
¢þ
>WENV170012416
APMI01171299
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1477
1553
+
Pro
TGG
[ENA]
¢þ
>WENV170645928
JQGF01000914
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
285
209
-
Pro
TGG
[ENA]
¢þ
>WENV170658959
JUGB01002058
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
529
453
-
Pro
TGG
[ENA]
¢þ
>WENV170784073
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
107229
107153
-
Pro
TGG
[ENA]
¢þ
>WENV170830264
MDSZ01023895
[MDSZ] marine metagenome; seawater
4041
3965
-
Pro
TGG
[ENA]
¢þ
>C181056245
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
3330923
3330847
-
Pro
TGG
-
¡û
>C191134444
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
2833117
2833041
-
Pro
TGG
-
¡û
>C191166108
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1955826
1955902
+
Pro
TGG
-
¡û
>C191220418
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
1227616
1227692
+
Pro
TGG
-
¡û
>W141712447
JMQR01000051
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
17960
17884
-
Pro
TGG
[ENA]
¡û
>W1910182676
BJNC01000004
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
117996
117920
-
Pro
TGG
[ENA]
¡û
>W1910725220
MGLJ01000205
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
1327
1251
-
Pro
TGG
[ENA]
¡û
>W1910725299
MGLL01000201
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
4991
4915
-
Pro
TGG
[ENA]
¡û
>W1911566728
PCPB01000001
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
492766
492842
+
Pro
TGG
[ENA]
¡û
>W1911566938
PCPF01000001
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
492766
492842
+
Pro
TGG
[ENA]
¡û
>W1911567186
PCPK01000001
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
105862
105786
-
Pro
TGG
[ENA]
¡û
>W1911567276
PCPM01000003
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
105875
105799
-
Pro
TGG
[ENA]
¡û
>W1911567388
PCPO01000006
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
23440
23364
-
Pro
TGG
[ENA]
¡û
>W1810693146
QLLC01000004
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
33893
33817
-
Pro
TGG
[ENA]
¡û
>WENV042172
AACY022216267
Marine microbial communities from Global Ocean Sampling (GOS)
837
761
-
Pro
TGG
[ENA]
>W11123439
ADUI01000127
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
21519
21443
-
Pro
TGG
[ENA]
¡û
>W1511489465
JWSY01000008
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
70154
70230
+
Pro
TGG
[ENA]
¡û
>W1511547901
JZRG01000029
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
7053
6977
-
Pro
TGG
[ENA]
¡û
>W1511596077
LBNT01000014
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
118722
118646
-
Pro
TGG
[ENA]
¡û
>C161047063
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2563768
2563692
-
Pro
TGG
[Ensembl]
¡û
>C161089130
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1204150
1204074
-
Pro
TGG
[Ensembl]
¡û
>W1610074229
BCWM01000013
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
105901
105977
+
Pro
TGG
[ENA]
¡û
>W1610729126
LMHT01000022
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
53050
53126
+
Pro
TGG
[ENA]
¡û
>W1610736173
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
267203
267127
-
Pro
TGG
[ENA]
¡û
>W1610738465
LMOY01000012
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
141928
142004
+
Pro
TGG
[ENA]
¡û
>W1710071347
BCWM01000013
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
105901
105977
+
Pro
TGG
[ENA]
¡û
>W1710084601
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
220578
220654
+
Pro
TGG
[ENA]
¡û
>W1710527035
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
536534
536458
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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