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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288893 (69 seq.)
>W1711142262
LVGQ01000005
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [LVGQ]
49733
49808
+
Asn
GTT
[ENA]
¡û
>W1711820953
MXMJ01000070
Gammaproteobacteria
Salmonella enterica [MXMJ]
2227
2152
-
Asn
GTT
[ENA]
¡û
>W1711824741
MXOM01000041
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 16:z4 [MXOM]
3241
3166
-
Asn
GTT
[ENA]
¡û
>W1711832017
MXTC01000069
Gammaproteobacteria
Salmonella enterica [MXTC]
907
832
-
Asn
GTT
[ENA]
¡û
>W1711949556
NBPE01000022
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 40:z4 [NBPE]
2244
2169
-
Asn
GTT
[ENA]
¡û
>W1711950120
NBPL01000031
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 40:z4 [NBPL]
2244
2169
-
Asn
GTT
[ENA]
¡û
>W1711950356
NBPO01000024
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 40:z4 [NBPO]
2244
2169
-
Asn
GTT
[ENA]
¡û
>W1711951931
NBQI01000025
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar 40:z4 [NBQI]
2244
2169
-
Asn
GTT
[ENA]
¡û
>C001848
CP000263
Gammaproteobacteria
Buchnera aphidicola BCc [CP000263]
389117
389045
-
Asn
GTT
[Ensembl]
¡û
>C004637
BA000003
Gammaproteobacteria
Buchnera aphidicola str. APS [Acyrthosiphon pisum] [BA000003]
591892
591820
-
Asn
GTT
[Ensembl]
¡û
>C021063
CP000034
Gammaproteobacteria
Shigella dysenteriae Sd197 [CP000034]
2047684
2047609
-
Asn
GTT
[Ensembl]
¡û
>W141005254
AFZA01000005
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Paratyphi A str. ZJ98-53 [AFZA]
212317
212242
-
Asn
GTT
[ENA]
¡û
>W141014218
AIAP01000067
Gammaproteobacteria
Escherichia coli C262_10 [AIAP]
19657
19582
-
Asn
GTT
[ENA]
¡û
>WENV181228835
OFEI01000002
[OFEI] insect metagenome; insect
96159
96234
+
Asn
GTT
[ENA]
¢þ
>WENV181228836
OFEI01000002
[OFEI] insect metagenome; insect
121454
121529
+
Asn
GTT
[ENA]
¢þ
>WENV181231999
OFEL01000009
[OFEL] insect metagenome; insect
24674
24749
+
Asn
GTT
[ENA]
¢þ
>WENV181232036
OFEL01000278
[OFEL] insect metagenome; insect
6651
6726
+
Asn
GTT
[ENA]
¢þ
>WENV181837278
OGVK01014741
[OGVK] freshwater metagenome; freshwater
1063
988
-
Asn
GTT
[ENA]
¢þ
>WENV182538659
OIXV01000073
[OIXV] human gut metagenome; faeces
43687
43612
-
Asn
GTT
[ENA]
¢þ
>WENV182594900
OJIX01000124
[OJIX] metagenome; faeces
52434
52359
-
Asn
GTT
[ENA]
¢þ
>WENV183537171
OOAG01046769
[OOAG] human gut metagenome; human gut
102
27
-
Asn
GTT
[ENA]
¢þ
>WENV170002043
AGFT01082992
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
337
262
-
Asn
GTT
[ENA]
¢þ
>C181092948
CP024013
Gammaproteobacteria
Candidatus Stammera capleta [CP024013]
240242
240168
-
Asn
GTT
-
¡û
>C181100263
CP024466
Gammaproteobacteria
Shigella dysenteriae BU53M1 [CP024466]
1970184
1970259
+
Asn
GTT
-
¡û
>C181140004
CP026774
Gammaproteobacteria
Shigella dysenteriae ATCC 13313 [CP026774]
4259563
4259488
-
Asn
GTT
-
¡û
>C181140157
CP026777
Gammaproteobacteria
Shigella dysenteriae 69-3818 [CP026777]
4212142
4212217
+
Asn
GTT
-
¡û
>C181140222
CP026780
Gammaproteobacteria
Shigella dysenteriae 53-3937 [CP026780]
1856118
1856193
+
Asn
GTT
-
¡û
>C181140312
CP026782
Gammaproteobacteria
Shigella dysenteriae 08-3380 [CP026782]
4448276
4448201
-
Asn
GTT
-
¡û
>C181140433
CP026784
Gammaproteobacteria
Shigella dysenteriae 80-547 [CP026784]
2230990
2230915
-
Asn
GTT
-
¡û
>C181140496
CP026786
Gammaproteobacteria
Shigella dysenteriae NCTC 9718 [CP026786]
4018191
4018116
-
Asn
GTT
-
¡û
>C181143571
CP026878
Gammaproteobacteria
Shigella dysenteriae 07-3308 [CP026878]
584587
584512
-
Asn
GTT
-
¡û
>C181164852
CP028374
Gammaproteobacteria
Candidatus Purcelliella pentastirinorum OLIH [CP028374]
374606
374534
-
Asn
GTT
-
¡û
>C181216134
LS483478
Gammaproteobacteria
Salmonella enterica subsp. houtenae serovar Houten NCTC10401 [LS483478]
1763822
1763897
+
Asn
GTT
-
¡û
>C191098045
CP032996
Gammaproteobacteria
Buchnera aphidicola [Therioaphis trifolii] Tma [CP032996]
389457
389385
-
Asn
GTT
-
¡û
>C191098077
CP033006
Gammaproteobacteria
Buchnera aphidicola [Macrosiphum euphorbiae] Meu [CP033006]
596450
596376
-
Asn
GTT
-
¡û
>C191130937
CP034784
Gammaproteobacteria
Escherichia coli ECZP248 [CP034784]
1777025
1777100
+
Asn
GTT
-
¡û
>C191132512
CP034867
Gammaproteobacteria
Buchnera aphidicola [Macrosiphum gaurae] Mga [CP034867]
594879
594805
-
Asn
GTT
-
¡û
>W141736937
JNMR01000003
Gammaproteobacteria
Escherichia coli 3-267-03_S4_C2 [JNMR]
109678
109753
+
Asn
GTT
[ENA]
¡û
>W09121546
ACFK01000001
Gammaproteobacteria
Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum) [ACFK]
593241
593167
-
Asn
GTT
[ENA]
¡û
>W1910019195
BDRI01000020
Gammaproteobacteria
Escherichia coli E1102 [BDRI]
13940
14015
+
Asn
GTT
[ENA]
¡û
>W1910069175
BFGL01000016
Gammaproteobacteria
Escherichia coli BE565 [BFGL]
1850
1775
-
Asn
GTT
[ENA]
¡û
>W1910097281
BFVL01000047
Gammaproteobacteria
Escherichia coli JML294 [BFVL]
32540
32615
+
Asn
GTT
[ENA]
¡û
>W1910133934
BIBM01000011
Gammaproteobacteria
Escherichia coli 09-A139-A [BIBM]
9480
9555
+
Asn
GTT
[ENA]
¡û
>C09101331
CP001161
Gammaproteobacteria
Buchnera aphidicola str. 5A [Acyrthosiphon pisum] [CP001161]
593331
593257
-
Asn
GTT
[Ensembl]
¡û
>C09101363
CP001158
Gammaproteobacteria
Buchnera aphidicola str. Tuc7 [Acyrthosiphon pisum] [CP001158]
593108
593034
-
Asn
GTT
[Ensembl]
¡û
>C141008021
CP006736
Gammaproteobacteria
Shigella dysenteriae 1617 [CP006736]
2005782
2005707
-
Asn
GTT
[Ensembl]
¡û
>W1910987646
NKPD01000034
Gammaproteobacteria
Escherichia coli MOD1-EC1562 [NKPD]
28087
28012
-
Asn
GTT
[ENA]
¡û
>W1911014324
NLKW01000099
Gammaproteobacteria
Escherichia coli MOD1-EC5577 [NLKW]
6986
6911
-
Asn
GTT
[ENA]
¡û
>W1911057791
NMIO01000023
Gammaproteobacteria
Escherichia coli MOD1-EC6362 [NMIO]
61142
61067
-
Asn
GTT
[ENA]
¡û
>W1911285681
NTMY01000092
Gammaproteobacteria
Escherichia coli N53976 [NTMY]
6253
6178
-
Asn
GTT
[ENA]
¡û
>W1911760013
QWTS01000195
Gammaproteobacteria
Shigella dysenteriae DMB SH20174 [QWTS]
528
603
+
Asn
GTT
[ENA]
¡û
>W1911760071
QWTT01000197
Gammaproteobacteria
Shigella dysenteriae DMB SH20191 [QWTT]
528
603
+
Asn
GTT
[ENA]
¡û
>W1810027950
BGUS01000025
Gammaproteobacteria
Escherichia coli TUM18661 [BGUS]
42798
42723
-
Asn
GTT
[ENA]
¡û
>W1810058759
PDKS01000001
Gammaproteobacteria
Candidatus Pantoea edessiphila SoET [PDKS]
138907
138832
-
Asn
GTT
[ENA]
¡û
>W1810327505
PUGP01000132
Gammaproteobacteria
Shigella dysenteriae BS983 [PUGP]
856
931
+
Asn
GTT
[ENA]
¡û
>W1810327888
PUGU01000172
Gammaproteobacteria
Shigella dysenteriae BS978 [PUGU]
6680
6605
-
Asn
GTT
[ENA]
¡û
>C151086326
CP011787
Gammaproteobacteria
Candidatus Baumannia cicadellinicola B-GSS [CP011787]
382699
382774
+
Asn
GTT
-
¡û
>C11102003
CP002303
Gammaproteobacteria
Buchnera aphidicola str. JF98 [Acyrthosiphon pisum] [CP002303]
593010
592936
-
Asn
GTT
[Ensembl]
¡û
>C11102032
CP002302
Gammaproteobacteria
Buchnera aphidicola str. JF99 [Acyrthosiphon pisum] [CP002302]
592960
592886
-
Asn
GTT
[Ensembl]
¡û
>C11102064
CP002300
Gammaproteobacteria
Buchnera aphidicola str. LL01 [Acyrthosiphon pisum] [CP002300]
593055
592981
-
Asn
GTT
[Ensembl]
¡û
>C11102096
CP002301
Gammaproteobacteria
Buchnera aphidicola str. TLW03 [Acyrthosiphon pisum] [CP002301]
593019
592945
-
Asn
GTT
[Ensembl]
¡û
>C11102128
CP002648
Gammaproteobacteria
Buchnera aphidicola str. Ua [Uroleucon ambrosiae] [CP002648]
567803
567728
-
Asn
GTT
[Ensembl]
¡û
>C11102160
CP002645
Gammaproteobacteria
Buchnera aphidicola str. Ak [Acyrthosiphon kondoi] [CP002645]
593243
593169
-
Asn
GTT
[Ensembl]
¡û
>W1511042964
JHTA01000013
Gammaproteobacteria
Escherichia coli 302312 [JHTA]
5953
5878
-
Asn
GTT
[ENA]
¡û
>W1511043109
JHTC01000014
Gammaproteobacteria
Escherichia coli 303301 [JHTC]
5954
5879
-
Asn
GTT
[ENA]
¡û
>W11124397
ADUT01000042
Gammaproteobacteria
Shigella dysenteriae 1617 [ADUT]
132219
132144
-
Asn
GTT
[ENA]
¡û
>W1610953270
LVGQ01000005
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium [LVGQ]
49733
49808
+
Asn
GTT
[ENA]
¡û
>W1710551473
FOGC01000005
Gammaproteobacteria
Rosenbergiella nectarea [FOGC]
54744
54669
-
Asn
GTT
[ENA]
¡û
>W1710692648
JZXE01000011
Gammaproteobacteria
Escherichia coli [JZXE]
10008
9933
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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