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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288921 (14 seq.)
>WENV180693506
OCZS011287317
[OCZS] soil metagenome; soil
15
88
+
Ala
TGC
[ENA]
¢þ
>C08010701
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
825201
825127
-
Ala
TGC
[Ensembl]
¡û
>C08010703
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
753002
752928
-
Ala
TGC
[Ensembl]
¡û
>C08010706
CP001080
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [CP001080]
357570
357496
-
Ala
TGC
[Ensembl]
¡û
>W141557065
JHUV01000009
Aquificota
Sulfurihydrogenibium subterraneum DSM 15120 [JHUV]
94142
94216
+
Ala
TGC
[ENA]
¡û
>W09107734
ABLS01000041
Aquificota
Sulfurihydrogenibium sp. YO3AOP1 [ABLS]
2957
3031
+
Ala
TGC
[ENA]
¡û
>W09114553
ABZS01000001
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
18914
18988
+
Ala
TGC
[ENA]
¡û
>W09114555
ABZS01000010
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
11882
11956
+
Ala
TGC
[ENA]
¡û
>W09114557
ABZS01000027
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1714
1788
+
Ala
TGC
[ENA]
¡û
>W09114561
ABZS01000050
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1714
1788
+
Ala
TGC
[ENA]
¡û
>W09114573
ABZS01000123
Aquificota
Sulfurihydrogenibium yellowstonense SS-5 [ABZS]
1714
1788
+
Ala
TGC
[ENA]
¡û
>C09109103
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
828643
828717
+
Ala
TGC
[Ensembl]
¡û
>C09109114
CP001229
Aquificota
Sulfurihydrogenibium azorense Az-Fu1 [CP001229]
1525365
1525291
-
Ala
TGC
[Ensembl]
¡û
>ENV09004234
ADKK01000235
Hot springs metagenome ctg_1106445177583
79941
80015
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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