This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288923 (10 seq.)
>WENV181228566
OFEH01000231
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
12757
12829
+
Met
CAT
[ENA]
¢þ
>WENV181407115
OGCG01006663
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
2913
2841
-
Met
CAT
[ENA]
¢þ
>C08005597
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
955122
955050
-
Met
CAT
[Ensembl]
¡û
>W09107130
ABFI01000008
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
12610
12538
-
Met
CAT
[ENA]
¡û
>C151003666
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
943899
943827
-
Met
CAT
[Ensembl]
¡û
>C151003710
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
944009
943937
-
Met
CAT
[Ensembl]
¡û
>W10115176
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
279671
279743
+
Met
CAT
[ENA]
¡û
>W11118762
ADJO01000001
Aquificota
Hydrogenobaculum sp. SN [ADJO]
279671
279743
+
Met
CAT
[ENA]
¡û
>C131013405
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
944089
944017
-
Met
CAT
[Ensembl]
¡û
>C131013717
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
944056
943984
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK