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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288926 (33 seq.)
>W1711460784
MJGC01000070
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
14821
14749
-
Met
CAT
[ENA]
¡û
>W1711510373
MLAW01000020
Cyanobacteriota
Roseofilum reptotaenium AO1-A [MLAW]
3548
3620
+
Met
CAT
[ENA]
¡û
>W1711584864
MNYZ01000070
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_40_61 [MNYZ]
64286
64213
-
Met
CAT
[ENA]
¡û
>W141004284
AFXD01000006
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
99733
99659
-
Met
CAT
[ENA]
¡û
>W141067391
ASAK01000005
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
829297
829369
+
Met
CAT
[ENA]
¡û
>W141096720
AVFS01000137
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
6799
6727
-
Met
CAT
[ENA]
¡û
>W141096751
AVFT01000050
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
17696
17768
+
Met
CAT
[ENA]
¡û
>W141096789
AVFU01000106
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
17958
17886
-
Met
CAT
[ENA]
¡û
>W141096827
AVFV01000158
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
20440
20512
+
Met
CAT
[ENA]
¡û
>W141096863
AVFW01000120
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
87524
87452
-
Met
CAT
[ENA]
¡û
>W141096902
AVFX01000089
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
96399
96471
+
Met
CAT
[ENA]
¡û
>W141096911
AVFY01000007
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
19165
19237
+
Met
CAT
[ENA]
¡û
>W141096954
AVFZ01000064
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
9496
9424
-
Met
CAT
[ENA]
¡û
>W141240127
CAFN01000073
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
274
200
-
Met
CAT
[ENA]
¡û
>WENV183702522
PDVI01001560
[PDVI] alkali sediment metagenome; glacial lake sediment
1199
1272
+
Met
CAT
[ENA]
¢þ
>WENV170002189
AGSF01000084
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
1235
1308
+
Met
CAT
[ENA]
¢þ
>WENV170640213
JFJP01014814
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3839
3912
+
Met
CAT
[ENA]
¢þ
>C181169676
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
5184669
5184595
-
Met
CAT
-
¡û
>C181169681
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
4743568
4743494
-
Met
CAT
-
¡û
>C191000808
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
4133103
4133031
-
Met
CAT
-
¡û
>W09113146
ABYK01000001
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
268025
267951
-
Met
CAT
[ENA]
¡û
>W09113158
ABYK01000013
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
24841
24767
-
Met
CAT
[ENA]
¡û
>W09113159
ABYK01000013
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
20513
20439
-
Met
CAT
[ENA]
¡û
>W1910175456
BJCD01000002
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
58996
58924
-
Met
CAT
[ENA]
¡û
>W1910194163
CZCS01000211
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
33144
33071
-
Met
CAT
[ENA]
¡û
>W1910194195
CZCT02000100
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
59240
59312
+
Met
CAT
[ENA]
¡û
>W1910194250
CZCU01000152
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
133537
133610
+
Met
CAT
[ENA]
¡û
>W1910194296
CZCZ01000007
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
429775
429703
-
Met
CAT
[ENA]
¡û
>W1910194339
CZDF01000172
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
626690
626617
-
Met
CAT
[ENA]
¡û
>W1810185592
PKGD01000579
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
419
345
-
Met
CAT
[ENA]
¡û
>W1511585664
LAYT01000143
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
842
768
-
Met
CAT
[ENA]
¡û
>C161049418
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
1355318
1355244
-
Met
CAT
-
¡û
>C161103138
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
540193
540267
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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