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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288995 (14 seq.)
>C010110
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
3725095
3725170
+
Asn
GTT
[Ensembl]
¡û
>C017486
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
3435497
3435422
-
Asn
GTT
[Ensembl]
¡û
>w018119
AASH01000052
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
20333
20256
-
Asn
GTT
[ENA]
¡û
>WENV180346688
OBLN01225421
[OBLN] sediment metagenome; sediment
171
245
+
Asn
GTT
[ENA]
¢þ
>WENV170006906
AMWB02064301
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
5463
5538
+
Asn
GTT
[ENA]
¢þ
>C191000619
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
3637635
3637710
+
Asn
GTT
-
¡û
>W09103525
AAJH01000005
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
178622
178697
+
Asn
GTT
[ENA]
¡û
>W1910230085
FOJJ01000037
Thermodesulfobacteriota
Desulfuromonas acetexigens [FOJJ]
225402
225327
-
Asn
GTT
[ENA]
¡û
>C09106384
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
440044
439969
-
Asn
GTT
[Ensembl]
¡û
>C151059746
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
3522056
3521981
-
Asn
GTT
[Ensembl]
¡û
>C10107452
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
3625254
3625329
+
Asn
GTT
[Ensembl]
¡û
>W1511501003
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
3293444
3293369
-
Asn
GTT
[ENA]
¡û
>C161025430
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
1827506
1827581
+
Asn
GTT
[Ensembl]
¡û
>C161080267
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
78169
78094
-
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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