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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289018 (16 seq.)
>WENV180735247
ODGZ01113639
[ODGZ] human metagenome; G_DNA_Supragingival plaque
255
180
-
Val
TAC
[ENA]
¢þ
>WENV180751627
ODHS01089819
[ODHS] human metagenome; G_DNA_Supragingival plaque
252
327
+
Val
TAC
[ENA]
¢þ
>WENV180788783
ODIS01117398
[ODIS] human metagenome; G_DNA_Supragingival plaque
546
471
-
Val
TAC
[ENA]
¢þ
>WENV181077506
OEAP01064431
[OEAP] human metagenome; G_DNA_Supragingival plaque
467
542
+
Val
TAC
[ENA]
¢þ
>WENV181178988
OEJT01000876
[OEJT] human metagenome; G_DNA_Supragingival plaque
16927
16852
-
Val
TAC
[ENA]
¢þ
>W141170976
AXZE01000010
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
129284
129359
+
Val
TAC
[ENA]
¡û
>PL191001700
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
188916
188841
-
Val
TAC
[ENA]
¡û
>PL191001840
LR215004
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:8 (LR215004)
112809
112884
+
Val
TAC
[ENA]
¡û
>C191218144
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
486035
486110
+
Val
TAC
-
¡û
>C191218591
LR215037
Mycoplasmatota
Mycoplasmopsis maculosa NCTC10168 [LR215037]
854508
854583
+
Val
TAC
-
¡û
>W141701754
JMKY01000001
Mycoplasmatota
Mycoplasmopsis lipofaciens ATCC 35015 [JMKY]
47515
47590
+
Val
TAC
[ENA]
¡û
>W1910002629
ATFG01000014
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
46692
46767
+
Val
TAC
[ENA]
¡û
>W1910002664
ATFH01000012
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
40258
40333
+
Val
TAC
[ENA]
¡û
>C09107656
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
399168
399243
+
Val
TAC
[Ensembl]
¡û
>C11114236
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
309164
309239
+
Val
TAC
[Ensembl]
¡û
>C11114271
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
343314
343389
+
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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