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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289040 (92 seq.)
>W131000354
AGEB01000005
Spirochaetota
Treponema denticola US-Trep [AGEB]
185105
185030
-
Asn
GTT
[ENA]
¡û
>W131003069
AHAB01000010
Spirochaetota
Treponema denticola SP23 [AHAB]
350921
350846
-
Asn
GTT
[ENA]
¡û
>W131003112
AHAC01000025
Spirochaetota
Treponema denticola SP32 [AHAC]
88415
88490
+
Asn
GTT
[ENA]
¡û
>W131003113
AHAD01000001
Spirochaetota
Treponema denticola SP44 [AHAD]
142427
142502
+
Asn
GTT
[ENA]
¡û
>W131205811
ATFC01000009
Spirochaetota
Treponema vincentii F0403 [ATFC]
306427
306352
-
Asn
GTT
[ENA]
¡û
>W131205883
ATFE01000003
Spirochaetota
Treponema medium ATCC 700293 [ATFE]
30350
30277
-
Asn
GTT
[ENA]
¡û
>C025501
AE017226
Spirochaetota
Treponema denticola ATCC 35405 [AE017226]
1018287
1018212
-
Asn
GTT
[Ensembl]
¡û
>W141005325
AGDQ01000003
Spirochaetota
Treponema denticola AL-2 [AGDQ]
393870
393945
+
Asn
GTT
[ENA]
¡û
>W141005384
AGDR01000033
Spirochaetota
Treponema denticola ASLM [AGDR]
84056
83981
-
Asn
GTT
[ENA]
¡û
>W141005437
AGDS01000017
Spirochaetota
Treponema denticola ATCC 33520 [AGDS]
166279
166354
+
Asn
GTT
[ENA]
¡û
>W141005480
AGDT01000021
Spirochaetota
Treponema denticola ATCC 33521 [AGDT]
158584
158659
+
Asn
GTT
[ENA]
¡û
>W141005525
AGDU01000032
Spirochaetota
Treponema denticola ATCC 35404 [AGDU]
98547
98472
-
Asn
GTT
[ENA]
¡û
>W141005569
AGDV01000021
Spirochaetota
Treponema denticola H-22 [AGDV]
245048
244973
-
Asn
GTT
[ENA]
¡û
>W141005610
AGDW01000023
Spirochaetota
Treponema denticola H1-T [AGDW]
229567
229642
+
Asn
GTT
[ENA]
¡û
>W141005652
AGDX01000015
Spirochaetota
Treponema denticola MYR-T [AGDX]
156614
156689
+
Asn
GTT
[ENA]
¡û
>W141005693
AGDY01000009
Spirochaetota
Treponema denticola OTK [AGDY]
503042
502967
-
Asn
GTT
[ENA]
¡û
>W141005727
AGDZ01000027
Spirochaetota
Treponema denticola SP33 [AGDZ]
20169
20094
-
Asn
GTT
[ENA]
¡û
>W141005767
AGEA01000014
Spirochaetota
Treponema denticola SP37 [AGEA]
133673
133598
-
Asn
GTT
[ENA]
¡û
>W141055921
AOTM01000215
Spirochaetota
Treponema pedis str. T M1 [AOTM]
1973
2048
+
Asn
GTT
[ENA]
¡û
>W141055938
AOTN01000084
Spirochaetota
Treponema pedis str. B 683 [AOTN]
12999
13074
+
Asn
GTT
[ENA]
¡û
>W141055968
AOTO01000017
Spirochaetota
Treponema pedis isoM1111 [AOTO]
5689
5614
-
Asn
GTT
[ENA]
¡û
>W141056048
AOTP01000239
Spirochaetota
Treponema pedis isoE1186 [AOTP]
1041
1116
+
Asn
GTT
[ENA]
¡û
>W141056076
AOTQ01000135
Spirochaetota
Treponema pedis isoM1220 [AOTQ]
1282
1207
-
Asn
GTT
[ENA]
¡û
>W141056140
AOTR01000279
Spirochaetota
Treponema pedis isoM1224 [AOTR]
717
792
+
Asn
GTT
[ENA]
¡û
>W141064695
AQCF01000035
Spirochaetota
Treponema phagedenis 4A [AQCF]
167258
167185
-
Asn
GTT
[ENA]
¡û
>WENV180696593
ODCT01025569
[ODCT] human metagenome; G_DNA_Buccal mucosa
77
151
+
Asn
GTT
[ENA]
¢þ
>WENV180708784
ODFJ01007530
[ODFJ] human metagenome; G_DNA_Tongue dorsum
89
16
-
Asn
GTT
[ENA]
¢þ
>WENV180721600
ODGL01003082
[ODGL] human metagenome; G_DNA_Subgingival plaque
1918
1991
+
Asn
GTT
[ENA]
¢þ
>WENV180727797
ODGU01012599
[ODGU] human metagenome; G_DNA_Supragingival plaque
2287
2360
+
Asn
GTT
[ENA]
¢þ
>WENV180727872
ODGU01014518
[ODGU] human metagenome; G_DNA_Supragingival plaque
1567
1494
-
Asn
GTT
[ENA]
¢þ
>WENV180728297
ODGU01036741
[ODGU] human metagenome; G_DNA_Supragingival plaque
1505
1578
+
Asn
GTT
[ENA]
¢þ
>WENV180735000
ODGZ01046084
[ODGZ] human metagenome; G_DNA_Supragingival plaque
693
766
+
Asn
GTT
[ENA]
¢þ
>WENV180750169
ODHS01000612
[ODHS] human metagenome; G_DNA_Supragingival plaque
10126
10199
+
Asn
GTT
[ENA]
¢þ
>WENV180776902
ODIK01211771
[ODIK] human metagenome; G_DNA_Tongue dorsum
88
161
+
Asn
GTT
[ENA]
¢þ
>WENV180788227
ODIS01040089
[ODIS] human metagenome; G_DNA_Supragingival plaque
1017
944
-
Asn
GTT
[ENA]
¢þ
>WENV180788981
ODIS01176403
[ODIS] human metagenome; G_DNA_Supragingival plaque
404
330
-
Asn
GTT
[ENA]
¢þ
>WENV180796797
ODJB01014094
[ODJB] human metagenome; G_DNA_Supragingival plaque
2305
2378
+
Asn
GTT
[ENA]
¢þ
>WENV180809918
ODJK01071184
[ODJK] human metagenome; G_DNA_Subgingival plaque
310
236
-
Asn
GTT
[ENA]
¢þ
>WENV180823820
ODJW01195652
[ODJW] human metagenome; G_DNA_Supragingival plaque
126
199
+
Asn
GTT
[ENA]
¢þ
>WENV180844131
ODKN01038708
[ODKN] human metagenome; G_DNA_Supragingival plaque
25
98
+
Asn
GTT
[ENA]
¢þ
>WENV180846018
ODKT01004025
[ODKT] human metagenome; G_DNA_Supragingival plaque
5
78
+
Asn
GTT
[ENA]
¢þ
>WENV180882813
ODMC01000597
[ODMC] human metagenome; G_DNA_Tongue dorsum
12837
12764
-
Asn
GTT
[ENA]
¢þ
>WENV180930910
ODTP01000651
[ODTP] human metagenome; G_DNA_Tongue dorsum
14648
14575
-
Asn
GTT
[ENA]
¢þ
>WENV180937947
ODTX01000264
[ODTX] human metagenome; G_DNA_Supragingival plaque
17221
17294
+
Asn
GTT
[ENA]
¢þ
>WENV180945234
ODUC01090789
[ODUC] human metagenome; G_DNA_Supragingival plaque
494
567
+
Asn
GTT
[ENA]
¢þ
>WENV180951510
ODUH01028344
[ODUH] human metagenome; G_DNA_Subgingival plaque
142
69
-
Asn
GTT
[ENA]
¢þ
>WENV180951842
ODUH01064005
[ODUH] human metagenome; G_DNA_Subgingival plaque
522
595
+
Asn
GTT
[ENA]
¢þ
>WENV180955254
ODUJ01059132
[ODUJ] human metagenome; G_DNA_Tongue dorsum
314
387
+
Asn
GTT
[ENA]
¢þ
>WENV180976549
ODUY01142856
[ODUY] human metagenome; G_DNA_Supragingival plaque
236
163
-
Asn
GTT
[ENA]
¢þ
>WENV180980339
ODVE01000051
[ODVE] human metagenome; G_DNA_Supragingival plaque
357
430
+
Asn
GTT
[ENA]
¢þ
>WENV180980401
ODVE01000116
[ODVE] human metagenome; G_DNA_Supragingival plaque
14431
14357
-
Asn
GTT
[ENA]
¢þ
>WENV180981321
ODVE01015287
[ODVE] human metagenome; G_DNA_Supragingival plaque
2000
2074
+
Asn
GTT
[ENA]
¢þ
>WENV181008618
ODWE01008913
[ODWE] human metagenome; G_DNA_Supragingival plaque
2802
2875
+
Asn
GTT
[ENA]
¢þ
>WENV181038544
ODXQ01002095
[ODXQ] human metagenome; G_DNA_Tongue dorsum
7561
7488
-
Asn
GTT
[ENA]
¢þ
>WENV181050569
ODYD01027451
[ODYD] human metagenome; G_DNA_Supragingival plaque
1163
1236
+
Asn
GTT
[ENA]
¢þ
>WENV181068139
ODZI01135046
[ODZI] human metagenome; G_DNA_Supragingival plaque
86
13
-
Asn
GTT
[ENA]
¢þ
>WENV181073594
OEAO01000575
[OEAO] human metagenome; G_DNA_Tongue dorsum
14662
14589
-
Asn
GTT
[ENA]
¢þ
>WENV181075984
OEAP01001035
[OEAP] human metagenome; G_DNA_Supragingival plaque
12240
12313
+
Asn
GTT
[ENA]
¢þ
>WENV181078612
OEAS01000187
[OEAS] human metagenome; G_DNA_Supragingival plaque
6650
6723
+
Asn
GTT
[ENA]
¢þ
>WENV181079082
OEAS01001794
[OEAS] human metagenome; G_DNA_Supragingival plaque
12183
12256
+
Asn
GTT
[ENA]
¢þ
>WENV181079191
OEAS01002789
[OEAS] human metagenome; G_DNA_Supragingival plaque
7556
7483
-
Asn
GTT
[ENA]
¢þ
>WENV181079434
OEAS01006479
[OEAS] human metagenome; G_DNA_Supragingival plaque
76
3
-
Asn
GTT
[ENA]
¢þ
>WENV181079525
OEAS01008194
[OEAS] human metagenome; G_DNA_Supragingival plaque
2168
2241
+
Asn
GTT
[ENA]
¢þ
>WENV181079587
OEAS01009820
[OEAS] human metagenome; G_DNA_Supragingival plaque
4377
4450
+
Asn
GTT
[ENA]
¢þ
>WENV181080399
OEAS01045384
[OEAS] human metagenome; G_DNA_Supragingival plaque
1488
1561
+
Asn
GTT
[ENA]
¢þ
>WENV181081083
OEAS01124098
[OEAS] human metagenome; G_DNA_Supragingival plaque
501
428
-
Asn
GTT
[ENA]
¢þ
>WENV181090859
OEBC01005193
[OEBC] human metagenome; G_DNA_Supragingival plaque
142
69
-
Asn
GTT
[ENA]
¢þ
>WENV181095400
OEBY01007490
[OEBY] human metagenome; G_DNA_Tongue dorsum
3889
3962
+
Asn
GTT
[ENA]
¢þ
>WENV181102726
OECT01008762
[OECT] human metagenome; G_DNA_Tongue dorsum
345
272
-
Asn
GTT
[ENA]
¢þ
>WENV181105299
OEED01002531
[OEED] human metagenome; G_DNA_Tongue dorsum
684
611
-
Asn
GTT
[ENA]
¢þ
>WENV181113289
OEEL01018813
[OEEL] human metagenome; G_DNA_Tongue dorsum
804
731
-
Asn
GTT
[ENA]
¢þ
>WENV181135709
OEGG01113597
[OEGG] human metagenome; G_DNA_Tongue dorsum
153
226
+
Asn
GTT
[ENA]
¢þ
>WENV181139159
OEGN01003718
[OEGN] human metagenome; G_DNA_Tongue dorsum
993
920
-
Asn
GTT
[ENA]
¢þ
>WENV181151437
OEHW01052413
[OEHW] human metagenome; G_DNA_Tongue dorsum
81
8
-
Asn
GTT
[ENA]
¢þ
>WENV181152362
OEIA01001031
[OEIA] human metagenome; G_DNA_Supragingival plaque
7074
7001
-
Asn
GTT
[ENA]
¢þ
>WENV181159308
OEIH01157410
[OEIH] human metagenome; G_DNA_Supragingival plaque
75
2
-
Asn
GTT
[ENA]
¢þ
>WENV181178770
OEJT01000234
[OEJT] human metagenome; G_DNA_Supragingival plaque
30961
30888
-
Asn
GTT
[ENA]
¢þ
>WENV181182887
OEJV01067444
[OEJV] human metagenome; G_DNA_Supragingival plaque
330
257
-
Asn
GTT
[ENA]
¢þ
>WENV183507912
OMGZ01000428
[OMGZ] human oral metagenome; human oral
1509
1436
-
Asn
GTT
[ENA]
¢þ
>WENV183508742
OMHF01001834
[OMHF] human oral metagenome; human oral
670
597
-
Asn
GTT
[ENA]
¢þ
>WENV183509004
OMHG01001639
[OMHG] human oral metagenome; human oral
329
402
+
Asn
GTT
[ENA]
¢þ
>WENV183509734
OMHJ01008532
[OMHJ] human oral metagenome; human oral
154
227
+
Asn
GTT
[ENA]
¢þ
>WENV183510067
OMHL01006122
[OMHL] human oral metagenome; human oral
148
221
+
Asn
GTT
[ENA]
¢þ
>C141003675
CP004120
Spirochaetota
Treponema pedis str. T A4 [CP004120]
2694110
2694035
-
Asn
GTT
[Ensembl]
¡û
>C151045994
CP009227
Spirochaetota
Treponema sp. OMZ 838 [CP009227]
1675593
1675666
+
Asn
GTT
[Ensembl]
¡û
>C151046022
CP009228
Spirochaetota
Treponema putidum OMZ 758 [CP009228]
418236
418311
+
Asn
GTT
[Ensembl]
¡û
>W10106162
ACYH01000037
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
135036
135111
+
Asn
GTT
[ENA]
¡û
>W1510074523
CDNC01000001
Spirochaetota
Treponema phagedenis V1 [CDNC]
23883
23810
-
Asn
GTT
[ENA]
¡û
>W11108485
ACYH01000037
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
135036
135111
+
Asn
GTT
[ENA]
¡û
>W11115158
ADEC01000021
Spirochaetota
Treponema denticola F0402 [ADEC]
226509
226434
-
Asn
GTT
[ENA]
¡û
>C11122968
CP001843
Spirochaetota
Treponema primitia ZAS-2 [CP001843]
3517914
3517840
-
Asn
GTT
[Ensembl]
¡û
>W11134616
AEEA01000079
Spirochaetota
Treponema primitia ZAS-1 [AEEA]
14017
14092
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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