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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289046 (49 seq.)
>W1710785200
LJHQ01000066
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
2220
2295
+
Ala
TGC
[ENA]
¡û
>W1710869465
LMJT01000005
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
282474
282399
-
Ala
TGC
[ENA]
¡û
>W1711072969
LSIB01000190
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
41677
41602
-
Ala
TGC
[ENA]
¡û
>C171049956
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
1346279
1346354
+
Ala
TGC
-
¡û
>C171049996
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
243986
243911
-
Ala
TGC
-
¡û
>WENV180346848
OBLN01349588
[OBLN] sediment metagenome; sediment
104
29
-
Ala
TGC
[ENA]
¢þ
>WENV180691369
OCZS010108146
[OCZS] soil metagenome; soil
492
567
+
Ala
TGC
[ENA]
¢þ
>WENV181169853
OEIV010012143
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
138
213
+
Ala
TGC
[ENA]
¢þ
>W141220751
AZYE01000043
Alphaproteobacteria
Microvirga lupini [AZYE]
3636
3561
-
Ala
TGC
[ENA]
¡û
>WENV170000025
AERA01001185
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
475
550
+
Ala
TGC
[ENA]
¢þ
>WENV170622391
FUWD013101341
[FUWD] metagenome; unknown
759
684
-
Ala
TGC
[ENA]
¢þ
>WENV170630615
FUWD013315758
[FUWD] metagenome; unknown
759
684
-
Ala
TGC
[ENA]
¢þ
>WENV170649340
JRYC01001505
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
858
783
-
Ala
TGC
[ENA]
¢þ
>WENV170680704
LFEF01012466
[LFEF] freshwater metagenome; waterbloom
1681
1606
-
Ala
TGC
[ENA]
¢þ
>WENV170714157
LNFM01057945
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3260
3185
-
Ala
TGC
[ENA]
¢þ
>WENV171003135
NNBT01001758
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
27190
27115
-
Ala
TGC
[ENA]
¢þ
>WENV171003942
NNBV01004745
[NNBV] plant metagenome; symbiotic tissue sample KVS11
1827
1902
+
Ala
TGC
[ENA]
¢þ
>W141485452
JFZJ01000165
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JFZJ]
3914
3839
-
Ala
TGC
[ENA]
¡û
>C181020280
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
101947
102022
+
Ala
TGC
-
¡û
>C181020306
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
4552682
4552607
-
Ala
TGC
-
¡û
>C181020318
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
2017704
2017629
-
Ala
TGC
-
¡û
>C181020324
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
1698341
1698266
-
Ala
TGC
-
¡û
>W1911653601
QDGA01000136
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
9470
9545
+
Ala
TGC
[ENA]
¡û
>W1911653603
QDGA01000182
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
3509
3434
-
Ala
TGC
[ENA]
¡û
>W1911653605
QDGA01000191
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
2204
2129
-
Ala
TGC
[ENA]
¡û
>W1911653607
QDGA01000192
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
2580
2655
+
Ala
TGC
[ENA]
¡û
>W1810445016
PZKF01000079
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
3419
3344
-
Ala
TGC
[ENA]
¡û
>W1810463350
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
2120788
2120863
+
Ala
TGC
[ENA]
¡û
>W1810463386
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
810431
810356
-
Ala
TGC
[ENA]
¡û
>W1810534756
QDAH01000157
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
3911
3836
-
Ala
TGC
[ENA]
¡û
>W1810706704
QMKH01000017
Alphaproteobacteria
Microvirga flavescens c27j1 [QMKH]
1980
2055
+
Ala
TGC
[ENA]
¡û
>W10112724
ADFF01000062
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
2399
2474
+
Ala
TGC
[ENA]
¡û
>WENV11100383
AERA01001185
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
475
550
+
Ala
TGC
[ENA]
¡û
>W11115951
ADFF01000062
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
2399
2474
+
Ala
TGC
[ENA]
¡û
>C11119028
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
2383949
2383874
-
Ala
TGC
[Ensembl]
¡û
>C11119033
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
1678157
1678082
-
Ala
TGC
[Ensembl]
¡û
>W1511624289
LCYG01000082
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
3586
3511
-
Ala
TGC
[ENA]
¡û
>C161070691
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
3934226
3934151
-
Ala
TGC
[Ensembl]
¡û
>W121068027
AJUA01000055
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
79014
78939
-
Ala
TGC
[ENA]
¡û
>W1610617196
LGSZ01000097
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
2226
2301
+
Ala
TGC
[ENA]
¡û
>W1610649006
LJHQ01000066
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
2220
2295
+
Ala
TGC
[ENA]
¡û
>W1610731811
LMJT01000005
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
282474
282399
-
Ala
TGC
[ENA]
¡û
>W1610912229
LSIB01000190
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
41677
41602
-
Ala
TGC
[ENA]
¡û
>W1710507601
FMVJ01000032
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
206
131
-
Ala
TGC
[ENA]
¡û
>W1710538950
FNUY01000004
Alphaproteobacteria
Bosea lathyri [FNUY]
529410
529335
-
Ala
TGC
[ENA]
¡û
>W1710538974
FNUY01000017
Alphaproteobacteria
Bosea lathyri [FNUY]
85160
85235
+
Ala
TGC
[ENA]
¡û
>W1710538978
FNUY01000020
Alphaproteobacteria
Bosea lathyri [FNUY]
3776
3701
-
Ala
TGC
[ENA]
¡û
>W1710538981
FNUY01000023
Alphaproteobacteria
Bosea lathyri [FNUY]
32400
32325
-
Ala
TGC
[ENA]
¡û
>W1710742810
LGSZ01000097
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
2226
2301
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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