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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289180 (119 seq.)
>W1710786180
LJIS01000090
Actinomycetota
Rhodococcus sp. ADH [LJIS]
30179
30254
+
Arg
CCG
[ENA]
¡û
>W1710889242
LNAK01000010
Actinomycetota
Rhodococcus sp. KB6 [LNAK]
27551
27476
-
Arg
CCG
[ENA]
¡û
>W1710899274
LNIU01000029
Actinomycetota
Prescottella equi [LNIU]
30001
30076
+
Arg
CCG
[ENA]
¡û
>W1710909179
LNQH01000017
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
30277
30352
+
Arg
CCG
[ENA]
¡û
>W1710994914
LPZM01000078
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
10920
10995
+
Arg
CCG
[ENA]
¡û
>W1711050096
LRRG01000175
Actinomycetota
Rhodococcus opacus [LRRG]
10424
10349
-
Arg
CCG
[ENA]
¡û
>W1711050244
LRRJ01000052
Actinomycetota
Rhodococcus qingshengii [LRRJ]
30159
30234
+
Arg
CCG
[ENA]
¡û
>W1711091463
LTCZ01000111
Actinomycetota
Rhodococcus sp. LB1 [LTCZ]
10034
9959
-
Arg
CCG
[ENA]
¡û
>W1711138361
LVCT01000337
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
10228
10303
+
Arg
CCG
[ENA]
¡û
>W1711168086
LVXC01000009
Actinomycetota
Rhodococcus qingshengii [LVXC]
33421
33496
+
Arg
CCG
[ENA]
¡û
>W1711179155
LWHK01000125
Actinomycetota
Rhodococcus sp. 1139 [LWHK]
13909
13984
+
Arg
CCG
[ENA]
¡û
>W1711252825
LYPG01000052
Actinomycetota
Rhodococcus erythropolis [LYPG]
133463
133388
-
Arg
CCG
[ENA]
¡û
>W1711261845
LYXB01000011
Actinomycetota
Rhodococcus qingshengii [LYXB]
35580
35655
+
Arg
CCG
[ENA]
¡û
>W1711351298
MDCH01000013
Actinomycetota
Rhodococcus erythropolis [MDCH]
30213
30288
+
Arg
CCG
[ENA]
¡û
>W1711475795
MJVD01000104
Actinomycetota
Rhodococcus erythropolis 1159 [MJVD]
188448
188373
-
Arg
CCG
[ENA]
¡û
>W1711492835
MKKX01000019
Actinomycetota
Rhodococcus sp. 1163 [MKKX]
32605
32678
+
Arg
CCG
[ENA]
¡û
>W1711492906
MKKY01000090
Actinomycetota
Rhodococcus sp. 1168 fascians [MKKY]
36070
36143
+
Arg
CCG
[ENA]
¡û
>W1711518875
MLKO01000011
Actinomycetota
Rhodococcus erythropolis [MLKO]
30016
30091
+
Arg
CCG
[ENA]
¡û
>W1711577226
MNPP01000021
Actinomycetota
Rhodococcus sp. D-1 [MNPP]
30289
30364
+
Arg
CCG
[ENA]
¡û
>W1711666260
MRBQ01000016
Actinomycetota
Rhodococcus erythropolis [MRBQ]
30063
30138
+
Arg
CCG
[ENA]
¡û
>W1711738420
MUBD01000018
Actinomycetota
Rhodococcus qingshengii [MUBD]
30480
30555
+
Arg
CCG
[ENA]
¡û
>W1711766923
MUZB01000014
Actinomycetota
Rhodococcus sp. 66b [MUZB]
140444
140369
-
Arg
CCG
[ENA]
¡û
>C171001783
CP009111
Actinomycetota
Rhodococcus opacus 1CP [CP009111]
5427620
5427695
+
Arg
CCG
-
¡û
>C171034415
CP014941
Actinomycetota
Rhodococcus sp. BH4 [CP014941]
4110073
4110148
+
Arg
CCG
-
¡û
>C171060521
CP017299
Actinomycetota
Rhodococcus sp. YL-1 [CP017299]
4096803
4096878
+
Arg
CCG
-
¡û
>W131061517
ANIU01000811
Actinomycetota
Rhodococcus wratislaviensis IFP 2016 [ANIU]
4691
4616
-
Arg
CCG
[ENA]
¡û
>W131087783
AODN01000001
Actinomycetota
Rhodococcus qingshengii BKS 20-40 [AODN]
113613
113538
-
Arg
CCG
[ENA]
¡û
>W131112029
APMY01000113
Actinomycetota
Rhodococcus rhodnii LMG 5362 [APMY]
54082
54007
-
Arg
CCG
[ENA]
¡û
>C018639
CP000431
Actinomycetota
Rhodococcus jostii RHA1 [CP000431]
1578369
1578444
+
Arg
CCG
[Ensembl]
¡û
>WENV180100227
OAOL01001678
[OAOL] sediment metagenome; sediment
1140
1215
+
Arg
CCG
[ENA]
¢þ
>WENV180354762
OBNE01018411
[OBNE] groundwater metagenome; groundwater
30093
30168
+
Arg
CCG
[ENA]
¢þ
>W141071744
ASJJ01000026
Actinomycetota
Rhodococcus rhodochrous ATCC 17895 [ASJJ]
143882
143807
-
Arg
CCG
[ENA]
¡û
>W141072046
ASKF01000007
Actinomycetota
Rhodococcus erythropolis R138 [ASKF]
35327
35402
+
Arg
CCG
[ENA]
¡û
>W141091876
AUZK01000027
Actinomycetota
Rhodococcus erythropolis DN1 [AUZK]
29924
29999
+
Arg
CCG
[ENA]
¡û
>W141094459
AVCO01000044
Actinomycetota
Rhodococcus sp. P27 [AVCO]
28750
28825
+
Arg
CCG
[ENA]
¡û
>W141233941
BAWF01000054
Actinomycetota
Rhodococcus wratislaviensis NBRC 100605 [BAWF]
45114
45039
-
Arg
CCG
[ENA]
¡û
>W141238640
BBLL01000009
Actinomycetota
Rhodococcus erythropolis [BBLL]
32698
32623
-
Arg
CCG
[ENA]
¡û
>WENV170762639
LUMW01020384
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
845
770
-
Arg
CCG
[ENA]
¢þ
>C181051548
CP021354
Actinomycetota
Rhodococcus oxybenzonivorans S2-17 [CP021354]
2201075
2201000
-
Arg
CCG
-
¡û
>C181089322
CP023720
Actinomycetota
Rhodococcus sp. H-CA8f [CP023720]
2214542
2214467
-
Arg
CCG
-
¡û
>C181124592
CP025959
Actinomycetota
Rhodococcus qingshengii djl-6-2 [CP025959]
4212165
4212240
+
Arg
CCG
-
¡û
>C191120346
CP034152
Actinomycetota
Rhodococcus sp. NJ-530 [CP034152]
4179637
4179712
+
Arg
CCG
-
¡û
>C191163945
CP039253
Actinomycetota
Rhodococcus sp. PAMC28707 [CP039253]
3403161
3403088
-
Arg
CCG
-
¡û
>C191163990
CP039254
Actinomycetota
Rhodococcus sp. PAMC28705 [CP039254]
4381357
4381430
+
Arg
CCG
-
¡û
>W141727260
JNCU01000020
Actinomycetota
Rhodococcus qingshengii [JNCU]
96272
96197
-
Arg
CCG
[ENA]
¡û
>W141773451
JOIL01000024
Actinomycetota
Rhodococcus erythropolis [JOIL]
43886
43811
-
Arg
CCG
[ENA]
¡û
>W141773506
JOIM01000019
Actinomycetota
Rhodococcus opacus [JOIM]
29909
29984
+
Arg
CCG
[ENA]
¡û
>W09132157
ACNO01000014
Actinomycetota
Rhodococcus erythropolis SK121 [ACNO]
107272
107197
-
Arg
CCG
[ENA]
¡û
>W1910128890
BHXB01000001
Actinomycetota
Rhodococcus erythropolis JCM 3201 [BHXB]
4104558
4104633
+
Arg
CCG
[ENA]
¡û
>W1910129256
BHYM01000088
Actinomycetota
Rhodococcus wratislaviensis C31-06 [BHYM]
39541
39466
-
Arg
CCG
[ENA]
¡û
>C09108728
AP008957
Actinomycetota
Rhodococcus erythropolis PR4 [AP008957]
4311341
4311416
+
Arg
CCG
[Ensembl]
¡û
>C141001831
CP003761
Actinomycetota
Rhodococcus erythropolis CCM2595 [CP003761]
4008642
4008717
+
Arg
CCG
[Ensembl]
¡û
>W1910637692
LQWU01000017
Actinomycetota
Rhodococcus erythropolis B7g [LQWU]
30088
30163
+
Arg
CCG
[ENA]
¡û
>W1910792739
MRCL01000011
Actinomycetota
Rhodococcus erythropolis ACN1 [MRCL]
183907
183832
-
Arg
CCG
[ENA]
¡û
>W1910910549
NHBD01000017
Actinomycetota
Rhodococcus erythropolis AV96 [NHBD]
30292
30367
+
Arg
CCG
[ENA]
¡û
>W1910910659
NHML01000011
Actinomycetota
Rhodococcus sp. NCIMB 12038 [NHML]
262541
262466
-
Arg
CCG
[ENA]
¡û
>W1911136553
NOVD01000035
Actinomycetota
Rhodococcus qingshengii 23b-28 [NOVD]
19932
19857
-
Arg
CCG
[ENA]
¡û
>W1911155400
NPJZ01000001
Actinomycetota
Rhodococcus sp. OK302 [NPJZ]
5314090
5314165
+
Arg
CCG
[ENA]
¡û
>W1911239641
NSDX01000012
Actinomycetota
Rhodococcus sp. ACPA1 [NSDX]
28480
28555
+
Arg
CCG
[ENA]
¡û
>W1911239751
NSDZ01000012
Actinomycetota
Rhodococcus sp. ACS1 [NSDZ]
28238
28313
+
Arg
CCG
[ENA]
¡û
>W1911398317
NWMZ01000001
Actinomycetota
Rhodococcus opacus DSM 44186 [NWMZ]
6205807
6205732
-
Arg
CCG
[ENA]
¡û
>W1911647304
QAJJ01000021
Actinomycetota
Rhodococcus sp. KBW08 [QAJJ]
29786
29861
+
Arg
CCG
[ENA]
¡û
>W1810330088
PUIO01000075
Actinomycetota
Rhodococcus opacus 04-OD7 [PUIO]
28742
28817
+
Arg
CCG
[ENA]
¡û
>W1810582426
QEUH01000009
Actinomycetota
Rhodococcus sp. AQ5-07 [QEUH]
161564
161489
-
Arg
CCG
[ENA]
¡û
>W1810861077
QTTP01000001
Actinomycetota
Rhodococcus wratislaviensis WS3308 [QTTP]
6733634
6733559
-
Arg
CCG
[ENA]
¡û
>W1810870083
QUAI01000001
Actinomycetota
Rhodococcus erythropolis ATCC 15903 [QUAI]
101140
101065
-
Arg
CCG
[ENA]
¡û
>C151005061
CP003949
Actinomycetota
Rhodococcus opacus PD630 [CP003949]
5806683
5806758
+
Arg
CCG
[Ensembl]
¡û
>C151079131
CP011295
Actinomycetota
Rhodococcus erythropolis BG43 [CP011295]
4038439
4038514
+
Arg
CCG
[Ensembl]
¡û
>W1510115776
CFHW01000012
Actinomycetota
Rhodococcus sp. 311R [CFHW]
66218
66143
-
Arg
CCG
[ENA]
¡û
>C10112493
CP001958
Actinomycetota
Segniliparus rotundus DSM 44985 [CP001958]
665544
665469
-
Arg
CCG
[Ensembl]
¡û
>W1511480871
JWJL01000338
Actinomycetota
Rhodococcus erythropolis S-43 [JWJL]
6106
6181
+
Arg
CCG
[ENA]
¡û
>W1511639785
LDPN01000067
Actinomycetota
Rhodococcus erythropolis CAS922i [LDPN]
30156
30231
+
Arg
CCG
[ENA]
¡û
>W1511656583
LEKE01000058
Actinomycetota
Rhodococcus sp. ARP2 [LEKE]
30417
30492
+
Arg
CCG
[ENA]
¡û
>W11177989
AGCF01000002
Actinomycetota
Rhodococcus erythropolis XP [AGCF]
2298495
2298570
+
Arg
CCG
[ENA]
¡û
>C161005735
CP007255
Actinomycetota
Rhodococcus erythropolis R138 [CP007255]
2852869
2852794
-
Arg
CCG
[Ensembl]
¡û
>C161019827
CP008947
Actinomycetota
Rhodococcus opacus R7 [CP008947]
7717669
7717594
-
Arg
CCG
-
¡û
>W121020645
AGVD01000468
Actinomycetota
Rhodococcus opacus PD630 [AGVD]
89098
89023
-
Arg
CCG
[ENA]
¡û
>W121062347
AJJH01000159
Actinomycetota
Rhodococcus opacus RKJ300 [AJJH]
10206
10131
-
Arg
CCG
[ENA]
¡û
>W121063844
AJLQ01000087
Actinomycetota
Rhodococcus sp. DK17 [AJLQ]
10337
10262
-
Arg
CCG
[ENA]
¡û
>W121071609
AJYC01000130
Actinomycetota
Rhodococcus opacus M213 [AJYC]
7439
7364
-
Arg
CCG
[ENA]
¡û
>W121086859
AKKP01000036
Actinomycetota
Rhodococcus sp. JVH1 [AKKP]
28154
28229
+
Arg
CCG
[ENA]
¡û
>W1610045467
BBBO01000155
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
6069
6144
+
Arg
CCG
[ENA]
¡û
>W1610048789
BBEK01000025
Actinomycetota
Rhodococcus erythropolis JCM 9803 [BBEK]
74799
74724
-
Arg
CCG
[ENA]
¡û
>W1610048840
BBEL01000029
Actinomycetota
Rhodococcus erythropolis JCM 9805 [BBEL]
51556
51481
-
Arg
CCG
[ENA]
¡û
>W1610050071
BBFM01000040
Actinomycetota
Rhodococcus erythropolis JCM 9804 [BBFM]
42083
42008
-
Arg
CCG
[ENA]
¡û
>W1610050579
BBFZ01001462
Actinomycetota
Rhodococcus sp. JCM 3009 [BBFZ]
809
734
-
Arg
CCG
[ENA]
¡û
>W1610050792
BBGF01000690
Actinomycetota
Rhodococcus koreensis JCM 10743 = NBRC 100607 [BBGF]
2016
1941
-
Arg
CCG
[ENA]
¡û
>W1610073958
BCWH01000002
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
2022769
2022694
-
Arg
CCG
[ENA]
¡û
>W1610515532
FMBB01000015
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
30277
30352
+
Arg
CCG
[ENA]
¡û
>W1610617037
LGSV01000140
Actinomycetota
Rhodococcus opacus jostii [LGSV]
11480
11555
+
Arg
CCG
[ENA]
¡û
>W1610649986
LJIS01000090
Actinomycetota
Rhodococcus sp. ADH [LJIS]
30179
30254
+
Arg
CCG
[ENA]
¡û
>W1610749620
LNAK01000010
Actinomycetota
Rhodococcus sp. KB6 [LNAK]
27551
27476
-
Arg
CCG
[ENA]
¡û
>W1610759678
LNIU01000029
Actinomycetota
Prescottella equi [LNIU]
30001
30076
+
Arg
CCG
[ENA]
¡û
>W1610767538
LNQH01000017
Actinomycetota
Rhodococcus qingshengii enclensis [LNQH]
30277
30352
+
Arg
CCG
[ENA]
¡û
>W1610849571
LPZM01000078
Actinomycetota
Rhodococcus sp. AJR001 [LPZM]
10920
10995
+
Arg
CCG
[ENA]
¡û
>W1610891225
LRRG01000175
Actinomycetota
Rhodococcus opacus [LRRG]
10424
10349
-
Arg
CCG
[ENA]
¡û
>W1610891373
LRRJ01000052
Actinomycetota
Rhodococcus qingshengii [LRRJ]
30159
30234
+
Arg
CCG
[ENA]
¡û
>W1610925607
LTCZ01000111
Actinomycetota
Rhodococcus sp. LB1 [LTCZ]
10034
9959
-
Arg
CCG
[ENA]
¡û
>W1610949401
LVCT01000337
Actinomycetota
Rhodococcus sp. EPR-134 [LVCT]
10228
10303
+
Arg
CCG
[ENA]
¡û
>W1610978093
LVXC01000009
Actinomycetota
Rhodococcus qingshengii [LVXC]
33421
33496
+
Arg
CCG
[ENA]
¡û
>W1611023820
LYXB01000011
Actinomycetota
Rhodococcus qingshengii [LYXB]
35580
35655
+
Arg
CCG
[ENA]
¡û
>W1710042308
BBBO01000155
Actinomycetota
Rhodococcus baikonurensis JCM 18801 [BBBO]
6069
6144
+
Arg
CCG
[ENA]
¡û
>W1710045261
BBEK01000025
Actinomycetota
Rhodococcus erythropolis JCM 9803 [BBEK]
74799
74724
-
Arg
CCG
[ENA]
¡û
>W1710045312
BBEL01000029
Actinomycetota
Rhodococcus erythropolis JCM 9805 [BBEL]
51556
51481
-
Arg
CCG
[ENA]
¡û
>W1710046470
BBFM01000040
Actinomycetota
Rhodococcus erythropolis JCM 9804 [BBFM]
42083
42008
-
Arg
CCG
[ENA]
¡û
>W1710046978
BBFZ01001462
Actinomycetota
Rhodococcus sp. JCM 3009 [BBFZ]
809
734
-
Arg
CCG
[ENA]
¡û
>W1710047191
BBGF01000690
Actinomycetota
Rhodococcus koreensis JCM 10743 = NBRC 100607 [BBGF]
2016
1941
-
Arg
CCG
[ENA]
¡û
>W1710071076
BCWH01000002
Actinomycetota
Rhodococcus sp. YH3-3 [BCWH]
2022769
2022694
-
Arg
CCG
[ENA]
¡û
>W1710071905
BCWY01000085
Actinomycetota
Rhodococcus jostii NBRC 16295 [BCWY]
10315
10240
-
Arg
CCG
[ENA]
¡û
>W1710071953
BCWZ01000046
Actinomycetota
Rhodococcus koreensis JCM 10743 = NBRC 100607 [BCWZ]
156601
156526
-
Arg
CCG
[ENA]
¡û
>W1710072145
BCXD01000011
Actinomycetota
Rhodococcus rhodnii NBRC 100604 [BCXD]
28665
28740
+
Arg
CCG
[ENA]
¡û
>W1710072227
BCXF01000003
Actinomycetota
Rhodococcus triatomae NBRC 103116 [BCXF]
301030
300955
-
Arg
CCG
[ENA]
¡û
>W1710072364
BCXH01000024
Actinomycetota
Rhodococcus yunnanensis NBRC 103083 [BCXH]
54669
54596
-
Arg
CCG
[ENA]
¡û
>W1710501222
FMBB01000015
Actinomycetota
Rhodococcus qingshengii enclensis [FMBB]
30277
30352
+
Arg
CCG
[ENA]
¡û
>W1710507204
FMVB01000014
Actinomycetota
Rhodococcus erythropolis 164Chir2E [FMVB]
140105
140030
-
Arg
CCG
[ENA]
¡û
>W1710517734
FNDN01000009
Actinomycetota
Rhodococcus triatomae [FNDN]
29032
29107
+
Arg
CCG
[ENA]
¡û
>W1710535877
FNSV01000005
Actinomycetota
Rhodococcus koreensis [FNSV]
7745775
7745700
-
Arg
CCG
[ENA]
¡û
>W1710536812
FNTL01000004
Actinomycetota
Rhodococcus jostii [FNTL]
1879656
1879731
+
Arg
CCG
[ENA]
¡û
>W1710742651
LGSV01000140
Actinomycetota
Rhodococcus opacus jostii [LGSV]
11480
11555
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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