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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289263 (39 seq.)
>w027637
ABCJ01000004
Campylobacterota
Caminibacter mediatlanticus TB-2 [ABCJ]
116254
116331
+
Asn
GTT
[ENA]
¡û
>WENV180287256
OBIK01006398
[OBIK] hydrothermal vent metagenome; sea water
136
61
-
Asn
GTT
[ENA]
¢þ
>WENV180288236
OBIL01095393
[OBIL] metagenome; hydrothermal vent
8
83
+
Asn
GTT
[ENA]
¢þ
>WENV180317051
OBKJ01010945
[OBKJ] metagenome; hydrothermal vent
328
403
+
Asn
GTT
[ENA]
¢þ
>WENV180332560
OBLD01046774
[OBLD] metagenome; water
195
120
-
Asn
GTT
[ENA]
¢þ
>WENV180581833
OCML01005282
[OCML] metagenome; diffuse fluid
407
332
-
Asn
GTT
[ENA]
¢þ
>W141078132
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
1085574
1085649
+
Asn
GTT
[ENA]
¡û
>W141078147
ATHP01000001
Campylobacterota
Lebetimonas sp. JH369 [ATHP]
642703
642628
-
Asn
GTT
[ENA]
¡û
>W141078172
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
1017815
1017890
+
Asn
GTT
[ENA]
¡û
>W141078187
ATHQ01000001
Campylobacterota
Lebetimonas sp. JH292 [ATHQ]
613676
613601
-
Asn
GTT
[ENA]
¡û
>W141078212
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
1085475
1085550
+
Asn
GTT
[ENA]
¡û
>W141078227
ATHR01000001
Campylobacterota
Lebetimonas sp. JS085 [ATHR]
642625
642550
-
Asn
GTT
[ENA]
¡û
>W141078252
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
1067353
1067428
+
Asn
GTT
[ENA]
¡û
>W141078267
ATHS01000001
Campylobacterota
Lebetimonas sp. JS032 [ATHS]
637519
637444
-
Asn
GTT
[ENA]
¡û
>W141078293
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
1038224
1038299
+
Asn
GTT
[ENA]
¡û
>W141078308
ATHT01000001
Campylobacterota
Lebetimonas sp. JS138 [ATHT]
625951
625876
-
Asn
GTT
[ENA]
¡û
>W141078333
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
1085625
1085700
+
Asn
GTT
[ENA]
¡û
>W141078348
ATHU01000001
Campylobacterota
Lebetimonas sp. JS170 [ATHU]
642724
642649
-
Asn
GTT
[ENA]
¡û
>WENV181206720
OFAW01002865
[OFAW] metagenome; hydrothermal vent
1393
1468
+
Asn
GTT
[ENA]
¢þ
>WENV181207993
OFBA01006322
[OFBA] metagenome; hydrothermal vent
300
225
-
Asn
GTT
[ENA]
¢þ
>WENV181208289
OFBB01002666
[OFBB] metagenome; hydrothermal vent
1657
1732
+
Asn
GTT
[ENA]
¢þ
>WENV181213447
OFBV01003076
[OFBV] metagenome; hydrothermal vent
1344
1419
+
Asn
GTT
[ENA]
¢þ
>WENV181213810
OFBW01000444
[OFBW] metagenome; hydrothermal vent
383
458
+
Asn
GTT
[ENA]
¢þ
>WENV181214313
OFBX01001949
[OFBX] metagenome; hydrothermal vent
171
96
-
Asn
GTT
[ENA]
¢þ
>WENV181214602
OFBY01002911
[OFBY] metagenome; hydrothermal vent
543
468
-
Asn
GTT
[ENA]
¢þ
>WENV181215069
OFBZ01002363
[OFBZ] metagenome; hydrothermal vent
584
509
-
Asn
GTT
[ENA]
¢þ
>WENV181215573
OFCA01003304
[OFCA] metagenome; hydrothermal vent
1161
1236
+
Asn
GTT
[ENA]
¢þ
>WENV181216199
OFCB01009154
[OFCB] metagenome; hydrothermal vent
1011
936
-
Asn
GTT
[ENA]
¢þ
>WENV181216561
OFCC01002824
[OFCC] metagenome; hydrothermal vent
463
388
-
Asn
GTT
[ENA]
¢þ
>WENV181224450
OFDF01001337
[OFDF] metagenome; hydrothermal vent
1563
1638
+
Asn
GTT
[ENA]
¢þ
>WENV181225211
OFDH01015826
[OFDH] metagenome; hydrothermal vent
42
117
+
Asn
GTT
[ENA]
¢þ
>C191044920
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
1760181
1760106
-
Asn
GTT
-
¡û
>C191044926
CP026530
Campylobacterota
Nautilia sp. PV-1 [CP026530]
1565345
1565270
-
Asn
GTT
-
¡û
>C191051415
CP027432
Campylobacterota
Caminibacter pacificus TB6 [CP027432]
155622
155697
+
Asn
GTT
-
¡û
>C191177863
CP040463
Campylobacterota
Caminibacter mediatlanticus TB-2 [CP040463]
154789
154714
-
Asn
GTT
-
¡û
>W1910015320
BDME01000001
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
403916
403991
+
Asn
GTT
[ENA]
¡û
>W1910015336
BDME01000002
Campylobacterota
Lebetimonas natsushimae HS1857 [BDME]
41606
41681
+
Asn
GTT
[ENA]
¡û
>C09108061
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
1643726
1643651
-
Asn
GTT
[Ensembl]
¡û
>C09108067
CP001279
Campylobacterota
Nautilia profundicola AmH [CP001279]
1480929
1480854
-
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK