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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289303 (25 seq.)
>W131205856
ATFD01000014
Spirochaetota
Treponema socranskii subsp. paredis ATCC 35535 [ATFD]
300801
300726
-
Pro
TGG
[ENA]
¡û
>WENV180721639
ODGL01004174
[ODGL] human metagenome; G_DNA_Subgingival plaque
1904
1831
-
Pro
TGG
[ENA]
¢þ
>WENV180727445
ODGU01005570
[ODGU] human metagenome; G_DNA_Supragingival plaque
4241
4314
+
Pro
TGG
[ENA]
¢þ
>WENV180734353
ODGZ01006502
[ODGZ] human metagenome; G_DNA_Supragingival plaque
902
975
+
Pro
TGG
[ENA]
¢þ
>WENV180750398
ODHS01001867
[ODHS] human metagenome; G_DNA_Supragingival plaque
1582
1655
+
Pro
TGG
[ENA]
¢þ
>WENV180765207
ODIB01040341
[ODIB] human metagenome; G_DNA_Supragingival plaque
202
275
+
Pro
TGG
[ENA]
¢þ
>WENV180788311
ODIS01046364
[ODIS] human metagenome; G_DNA_Supragingival plaque
188
261
+
Pro
TGG
[ENA]
¢þ
>WENV180797234
ODJB01039464
[ODJB] human metagenome; G_DNA_Supragingival plaque
1105
1032
-
Pro
TGG
[ENA]
¢þ
>WENV180809556
ODJK01024316
[ODJK] human metagenome; G_DNA_Subgingival plaque
770
696
-
Pro
TGG
[ENA]
¢þ
>WENV180844228
ODKN01055933
[ODKN] human metagenome; G_DNA_Supragingival plaque
385
459
+
Pro
TGG
[ENA]
¢þ
>WENV180847157
ODKT01047036
[ODKT] human metagenome; G_DNA_Supragingival plaque
153
80
-
Pro
TGG
[ENA]
¢þ
>WENV180889410
ODMN01039961
[ODMN] human metagenome; G_DNA_Supragingival plaque
494
567
+
Pro
TGG
[ENA]
¢þ
>WENV180922965
ODTJ01023938
[ODTJ] human metagenome; G_DNA_Supragingival plaque
464
391
-
Pro
TGG
[ENA]
¢þ
>W141091800
AUZJ01000017
Spirochaetota
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 [AUZJ]
62264
62189
-
Pro
TGG
[ENA]
¡û
>WENV180940001
ODTX01170042
[ODTX] human metagenome; G_DNA_Supragingival plaque
93
166
+
Pro
TGG
[ENA]
¢þ
>WENV180944554
ODUC01022895
[ODUC] human metagenome; G_DNA_Supragingival plaque
895
968
+
Pro
TGG
[ENA]
¢þ
>WENV180951699
ODUH01042990
[ODUH] human metagenome; G_DNA_Subgingival plaque
308
381
+
Pro
TGG
[ENA]
¢þ
>WENV180975437
ODUY01006299
[ODUY] human metagenome; G_DNA_Supragingival plaque
2822
2749
-
Pro
TGG
[ENA]
¢þ
>WENV180998808
ODVT01002172
[ODVT] human metagenome; G_DNA_Buccal mucosa
5413
5486
+
Pro
TGG
[ENA]
¢þ
>WENV181050917
ODYD01091729
[ODYD] human metagenome; G_DNA_Supragingival plaque
323
396
+
Pro
TGG
[ENA]
¢þ
>WENV181077002
OEAP01021096
[OEAP] human metagenome; G_DNA_Supragingival plaque
346
419
+
Pro
TGG
[ENA]
¢þ
>WENV181081442
OEAS01210087
[OEAS] human metagenome; G_DNA_Supragingival plaque
358
431
+
Pro
TGG
[ENA]
¢þ
>W141107054
AVQI01000006
Spirochaetota
Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 [AVQI]
62268
62193
-
Pro
TGG
[ENA]
¡û
>WENV181091056
OEBC01010414
[OEBC] human metagenome; G_DNA_Supragingival plaque
2907
2834
-
Pro
TGG
[ENA]
¢þ
>WENV181179882
OEJT01024935
[OEJT] human metagenome; G_DNA_Supragingival plaque
392
319
-
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK