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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289395 (56 seq.)
>W1711009068
LQQL01000607
Bacillota
Weissella sp. DD23 [LQQL]
720
646
-
Lys
TTT
[ENA]
¡û
>W1711168488
LVYB01000033
Bacillota
Weissella cibaria [LVYB]
18123
18049
-
Lys
TTT
[ENA]
¡û
>W1711572582
MNBZ01000007
Bacillota
Weissella confusa [MNBZ]
652
726
+
Lys
TTT
[ENA]
¡û
>W1711999886
NDXJ01000009
Bacillota
Weissella cibaria [NDXJ]
471
545
+
Lys
TTT
[ENA]
¡û
>C171026207
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
1171577
1171651
+
Lys
TTT
-
¡û
>C171029785
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
710935
711009
+
Lys
TTT
-
¡û
>C171029871
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
721419
721493
+
Lys
TTT
-
¡û
>WENV181515712
OGGW01015596
[OGGW] metagenome; Human gut stool
1087
1013
-
Lys
TTT
[ENA]
¢þ
>WENV181841183
OGVR01000343
[OGVR] freshwater metagenome; freshwater
3580
3652
+
Lys
TTT
[ENA]
¢þ
>W141240359
CAGH01000007
Bacillota
Weissella confusa LBAE C39-2 [CAGH]
259
333
+
Lys
TTT
[ENA]
¡û
>C181047675
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
1859126
1859052
-
Lys
TTT
-
¡û
>C181069775
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
1018155
1018081
-
Lys
TTT
-
¡û
>C181152858
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
2316474
2316548
+
Lys
TTT
-
¡û
>C191013646
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1221570
1221498
-
Lys
TTT
-
¡û
>C191051617
CP027563
Bacillota
Weissella confusa VTT E-133279 [CP027563]
618761
618835
+
Lys
TTT
-
¡û
>C191051702
CP027565
Bacillota
Weissella confusa VTT E-90392 [CP027565]
598417
598491
+
Lys
TTT
-
¡û
>C191137887
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
1714706
1714632
-
Lys
TTT
-
¡û
>C191188485
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
774865
774791
-
Lys
TTT
-
¡û
>W1910178067
BJEF01000004
Bacillota
Weissella cibaria JCM 12495 [BJEF]
416
490
+
Lys
TTT
[ENA]
¡û
>W1910401433
FUWE01000018
Bacillota
Weissella confusa AB3E41 [FUWE]
89
163
+
Lys
TTT
[ENA]
¡û
>W1910638412
LRRC01000012
Bacillota
Weissella cibaria 110 [LRRC]
289
363
+
Lys
TTT
[ENA]
¡û
>W1911634681
PVRY01000009
Bacillota
Weissella confusa CCUG 61560 [PVRY]
472
546
+
Lys
TTT
[ENA]
¡û
>W1911634759
PVRZ01000007
Bacillota
Weissella confusa CCUG 51220 [PVRZ]
390
464
+
Lys
TTT
[ENA]
¡û
>W1911634836
PVSA01000007
Bacillota
Weissella confusa CCUG 39518 [PVSA]
350
424
+
Lys
TTT
[ENA]
¡û
>W1911634912
PVSB01000013
Bacillota
Weissella confusa CCUG 37938 [PVSB]
472
546
+
Lys
TTT
[ENA]
¡û
>W1911634988
PVSC01000004
Bacillota
Weissella confusa CCUG 36556 [PVSC]
390
464
+
Lys
TTT
[ENA]
¡û
>W1911635110
PVSD01000027
Bacillota
Weissella confusa CCUG 30969 [PVSD]
1667
1593
-
Lys
TTT
[ENA]
¡û
>W1911635145
PVSE01000008
Bacillota
Weissella confusa F71 [PVSE]
390
464
+
Lys
TTT
[ENA]
¡û
>W1911635219
PVSF01000005
Bacillota
Weissella confusa EJ61 [PVSF]
390
464
+
Lys
TTT
[ENA]
¡û
>W1911635301
PVSG01000008
Bacillota
Weissella confusa EJ52 [PVSG]
390
464
+
Lys
TTT
[ENA]
¡û
>W1911635379
PVSH01000011
Bacillota
Weissella confusa EJ12 [PVSH]
350
424
+
Lys
TTT
[ENA]
¡û
>W1911635454
PVSI01000014
Bacillota
Weissella confusa VTT E-163496 [PVSI]
390
464
+
Lys
TTT
[ENA]
¡û
>W1911635534
PVSJ01000002
Bacillota
Weissella confusa VTT E-153460 [PVSJ]
390
464
+
Lys
TTT
[ENA]
¡û
>W1911635654
PVSK01000034
Bacillota
Weissella confusa VTT E-153457 [PVSK]
1669
1595
-
Lys
TTT
[ENA]
¡û
>W1911635690
PVSL01000002
Bacillota
Weissella confusa VTT E-143403 [PVSL]
390
464
+
Lys
TTT
[ENA]
¡û
>W1911635769
PVSM01000006
Bacillota
Weissella confusa VTT E-072748 [PVSM]
390
464
+
Lys
TTT
[ENA]
¡û
>W1911635848
PVSN01000021
Bacillota
Weissella confusa VTT E-062653 [PVSN]
399
473
+
Lys
TTT
[ENA]
¡û
>W1911635924
PVSO01000019
Bacillota
Weissella confusa VTT E-95616 [PVSO]
231
305
+
Lys
TTT
[ENA]
¡û
>W1911636002
PVSP01000004
Bacillota
Weissella confusa VTT E-90393 [PVSP]
390
464
+
Lys
TTT
[ENA]
¡û
>W1810576387
QENM01000004
Bacillota
Weissella confusa 32 [QENM]
390
464
+
Lys
TTT
[ENA]
¡û
>W1810784458
QRAS01000001
Bacillota
Weissella soli CECT 7031 [QRAS]
831934
831862
-
Lys
TTT
[ENA]
¡û
>W1810816536
QSBT01000026
Bacillota
Weissella confusa AF03-13 [QSBT]
322
396
+
Lys
TTT
[ENA]
¡û
>W1810828864
QSKQ01000016
Bacillota
Weissella cibaria AM27-24 [QSKQ]
302
376
+
Lys
TTT
[ENA]
¡û
>W1810828895
QSKR01000004
Bacillota
Weissella cibaria AM27-22LB [QSKR]
320
394
+
Lys
TTT
[ENA]
¡û
>W1810842380
QSVX01000015
Bacillota
Weissella cibaria OF06-4 [QSVX]
5448
5522
+
Lys
TTT
[ENA]
¡û
>W1510500346
CRHY01000036
Bacillota
Streptococcus pneumoniae SMRU1312 [CRHY]
335
409
+
Lys
TTT
[ENA]
¡û
>W1511479011
JWHT01000037
Bacillota
Weissella cibaria AB3b [JWHT]
65364
65290
-
Lys
TTT
[ENA]
¡û
>W1511479134
JWHV01000020
Bacillota
Weissella cibaria ff3PR [JWHV]
34560
34486
-
Lys
TTT
[ENA]
¡û
>W11139994
AEKT01000032
Bacillota
Weissella cibaria KACC 11862 [AEKT]
36947
36873
-
Lys
TTT
[ENA]
¡û
>C161046758
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
1153464
1153538
+
Lys
TTT
[Ensembl]
¡û
>W1610528120
JQAY01000003
Bacillota
Weissella confusa [JQAY]
253091
253017
-
Lys
TTT
[ENA]
¡û
>W1610528844
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
286241
286167
-
Lys
TTT
[ENA]
¡û
>W1610857588
LQQL01000607
Bacillota
Weissella sp. DD23 [LQQL]
720
646
-
Lys
TTT
[ENA]
¡û
>W1610978340
LVYB01000033
Bacillota
Weissella cibaria [LVYB]
18123
18049
-
Lys
TTT
[ENA]
¡û
>W1710629710
JQAY01000003
Bacillota
Weissella confusa [JQAY]
253091
253017
-
Lys
TTT
[ENA]
¡û
>W1710630434
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
286241
286167
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK