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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289404 (37 seq.)
>W1711185760
LWNQ01000019
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
375
302
-
Lys
TTT
[ENA]
¡û
>W1711186340
LWOD01000030
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
11481
11408
-
Lys
TTT
[ENA]
¡û
>W131206271
ATFO01000002
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
10481
10408
-
Lys
TTT
[ENA]
¡û
>WENV180029224
FTJI01223508
[FTJI] metagenome; soil
954
880
-
Lys
TTT
[ENA]
¢þ
>WENV180312842
OBJZ01000381
[OBJZ] human gut metagenome; fecal sample
11095
11022
-
Lys
TTT
[ENA]
¢þ
>W141241453
CAHH01000075
Actinomycetota
Timonella senegalensis JC301 [CAHH]
30652
30727
+
Lys
TTT
[ENA]
¡û
>WENV182812809
OJXV01000052
[OJXV] human gut metagenome; human gut
11159
11086
-
Lys
TTT
[ENA]
¢þ
>WENV182819723
OKAF01003951
[OKAF] human gut metagenome; human gut
168
95
-
Lys
TTT
[ENA]
¢þ
>WENV182825563
OKCK01000557
[OKCK] human gut metagenome; human gut
3772
3699
-
Lys
TTT
[ENA]
¢þ
>WENV182831632
OKEG01000037
[OKEG] human gut metagenome; human gut
2803
2730
-
Lys
TTT
[ENA]
¢þ
>WENV182855126
OKMY01000070
[OKMY] human gut metagenome; human gut
2803
2730
-
Lys
TTT
[ENA]
¢þ
>WENV182962551
OKWN01004041
[OKWN] human gut metagenome; stool
318
245
-
Lys
TTT
[ENA]
¢þ
>WENV183697327
OUNJ010379598
[OUNJ] metagenome; soil
462
536
+
Lys
TTT
[ENA]
¢þ
>W141400421
JDRS01000002
Actinomycetota
Dermabacter hominis 1368 [JDRS]
179850
179777
-
Lys
TTT
[ENA]
¡û
>C191165892
CP039424
Actinomycetota
Citricoccus sp. SGAir0253 [CP039424]
95115
95190
+
Lys
TTT
-
¡û
>W1810167483
PJIN01000003
Actinomycetota
Arthrobacter sp. N199823 [PJIN]
121210
121284
+
Lys
TTT
[ENA]
¡û
>W1810167523
PJIO01000002
Actinomycetota
Arthrobacter sp. GMC3 [PJIO]
180288
180362
+
Lys
TTT
[ENA]
¡û
>W1810187325
PKHM01000006
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
86292
86365
+
Lys
TTT
[ENA]
¡û
>W1810242497
PPXB01000005
Actinomycetota
Arthrobacter glacialis TMN-18 [PPXB]
109631
109557
-
Lys
TTT
[ENA]
¡û
>W1810242547
PPXC01000005
Actinomycetota
Arthrobacter glacialis HLT2-12-2 [PPXC]
234997
235071
+
Lys
TTT
[ENA]
¡û
>W1810365259
PVTY01000004
Actinomycetota
Nesterenkonia sandarakina CG 35 [PVTY]
138612
138537
-
Lys
TTT
[ENA]
¡û
>W1810627311
QHLZ01000004
Actinomycetota
Arthrobacter psychrochitiniphilus GP3 [QHLZ]
215683
215757
+
Lys
TTT
[ENA]
¡û
>W1810673880
QJVC01000001
Actinomycetota
Arthrobacter psychrolactophilus B7 [QJVC]
163033
163107
+
Lys
TTT
[ENA]
¡û
>W1810673982
QJVD01000030
Actinomycetota
Arthrobacter livingstonensis LI2 [QJVD]
22620
22695
+
Lys
TTT
[ENA]
¡û
>W1810673997
QJVE01000003
Actinomycetota
Arthrobacter stackebrandtii CCM 2783 [QJVE]
423067
422993
-
Lys
TTT
[ENA]
¡û
>W1810788294
QREH01000001
Actinomycetota
Citricoccus muralis DSM 14442 [QREH]
2779614
2779688
+
Lys
TTT
[ENA]
¡û
>C151029502
CP007595
Actinomycetota
Arthrobacter sp. PAMC 25486 [CP007595]
2615205
2615130
-
Lys
TTT
[Ensembl]
¡û
>C151097186
CP012677
Actinomycetota
Arthrobacter alpinus R3.8 [CP012677]
3625743
3625818
+
Lys
TTT
-
¡û
>W1511343701
JREV01000067
Actinobacteria
Arthrobacter sp. A3 [JREV] A3 [JREV]
64020
64095
+
Lys
TTT
[ENA]
¡û
>W1511524506
JYFC01000002
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
676429
676354
-
Lys
TTT
[ENA]
¡û
>C161039622
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
1959004
1958931
-
Lys
TTT
[Ensembl]
¡û
>C161052831
CP013200
Actinomycetota
Arthrobacter alpinus ERGS4:06 [CP013200]
775996
776071
+
Lys
TTT
[Ensembl]
¡û
>C161060685
CP013745
Actinomycetota
Arthrobacter alpinus A3 [CP013745]
3410924
3410849
-
Lys
TTT
[Ensembl]
¡û
>W1610095076
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
25884
25811
-
Lys
TTT
[ENA]
¡û
>W1710097871
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
25884
25811
-
Lys
TTT
[ENA]
¡û
>W1710537472
FNTV01000001
Actinomycetota
Arthrobacter alpinus [FNTV]
3609749
3609824
+
Lys
TTT
[ENA]
¡û
>W1710602498
FUYG01000003
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
477724
477649
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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