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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289482 (104 seq.)
>W131114386
APPE01000041
Gammaproteobacteria
Acinetobacter sp. NIPH 899 [APPE]
309895
309820
-
Lys
TTT
[ENA]
¡û
>W131114387
APPE01000041
Gammaproteobacteria
Acinetobacter sp. NIPH 899 [APPE]
309762
309687
-
Lys
TTT
[ENA]
¡û
>W131114388
APPE01000041
Gammaproteobacteria
Acinetobacter sp. NIPH 899 [APPE]
309629
309554
-
Lys
TTT
[ENA]
¡û
>W131115023
APPN01000080
Gammaproteobacteria
Acinetobacter gerneri DSM 14967 = CIP 107464 [APPN]
216563
216638
+
Lys
TTT
[ENA]
¡û
>W131117162
APQS01000019
Gammaproteobacteria
Acinetobacter lwoffii NCTC 5866 = CIP 64.10 [APQS]
477872
477797
-
Lys
TTT
[ENA]
¡û
>W131118392
APRJ01000013
Gammaproteobacteria
Acinetobacter sp. NIPH 713 [APRJ]
102978
103053
+
Lys
TTT
[ENA]
¡û
>W131118393
APRJ01000013
Gammaproteobacteria
Acinetobacter sp. NIPH 713 [APRJ]
103074
103149
+
Lys
TTT
[ENA]
¡û
>W131118963
APRS01000002
Gammaproteobacteria
Acinetobacter sp. NIPH 2171 [APRS]
121016
121091
+
Lys
TTT
[ENA]
¡û
>W131118964
APRS01000002
Gammaproteobacteria
Acinetobacter sp. NIPH 2171 [APRS]
121113
121188
+
Lys
TTT
[ENA]
¡û
>W131118965
APRS01000002
Gammaproteobacteria
Acinetobacter sp. NIPH 2171 [APRS]
121246
121321
+
Lys
TTT
[ENA]
¡û
>W1711088917
LSZG01000001
Gammaproteobacteria
Acinetobacter sp. SFC (LSZG)
226602
226677
+
Lys
TTT
[ENA]
¡û
>W1711088918
LSZG01000001
Gammaproteobacteria
Acinetobacter sp. SFC (LSZG)
226695
226770
+
Lys
TTT
[ENA]
¡û
>W1711088919
LSZG01000001
Gammaproteobacteria
Acinetobacter sp. SFC (LSZG)
226835
226910
+
Lys
TTT
[ENA]
¡û
>W1711089010
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB (LSZH)
370858
370783
-
Lys
TTT
[ENA]
¡û
>W1711089011
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB (LSZH)
370762
370687
-
Lys
TTT
[ENA]
¡û
>W1711089012
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB (LSZH)
370622
370547
-
Lys
TTT
[ENA]
¡û
>W1711089084
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA (LSZI)
97439
97364
-
Lys
TTT
[ENA]
¡û
>W1711089085
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA (LSZI)
97343
97268
-
Lys
TTT
[ENA]
¡û
>W1711089086
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA (LSZI)
97205
97130
-
Lys
TTT
[ENA]
¡û
>W1711089128
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD (LSZJ)
532859
532934
+
Lys
TTT
[ENA]
¡û
>W1711089129
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD (LSZJ)
532955
533030
+
Lys
TTT
[ENA]
¡û
>W1711089130
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD (LSZJ)
533093
533168
+
Lys
TTT
[ENA]
¡û
>W1711126500
LUOR01000006
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S32_B1 (LUOR)
39677
39752
+
Lys
TTT
[ENA]
¡û
>W1711126501
LUOR01000006
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S32_B1 (LUOR)
39895
39970
+
Lys
TTT
[ENA]
¡û
>W1711126649
LUOV01000053
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 (LUOV)
9878
9803
-
Lys
TTT
[ENA]
¡û
>W131203442
ASYY01000048
Gammaproteobacteria
Acinetobacter gerneri MTCC 9824 [ASYY]
103192
103267
+
Lys
TTT
[ENA]
¡û
>W131203443
ASYY01000048
Gammaproteobacteria
Acinetobacter gerneri MTCC 9824 [ASYY]
103290
103365
+
Lys
TTT
[ENA]
¡û
>W131206974
ATGI01000038
Gammaproteobacteria
Acinetobacter rudis CIP 110305 [ATGI]
222390
222465
+
Lys
TTT
[ENA]
¡û
>W131206975
ATGI01000038
Gammaproteobacteria
Acinetobacter rudis CIP 110305 [ATGI]
222486
222561
+
Lys
TTT
[ENA]
¡û
>W1711492503
MKKK01000045
Gammaproteobacteria
Acinetobacter qingfengensis (MKKK)
120656
120731
+
Lys
TTT
[ENA]
¡û
>W1711492504
MKKK01000045
Gammaproteobacteria
Acinetobacter qingfengensis (MKKK)
120776
120851
+
Lys
TTT
[ENA]
¡û
>W1712003453
NEGF01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4655 (NEGF)
226684
226759
+
Lys
TTT
[ENA]
¡û
>W1712003454
NEGF01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4655 (NEGF)
226777
226852
+
Lys
TTT
[ENA]
¡û
>W1712003455
NEGF01000002
Gammaproteobacteria
Acinetobacter sp. ANC 4655 (NEGF)
226917
226992
+
Lys
TTT
[ENA]
¡û
>WENV180108974
OAPI01050351
[OAPI] marine metagenome; ENVO.00002150
320
245
-
Lys
TTT
[ENA]
¢þ
>W141177225
AYER01000007
Gammaproteobacteria
Acinetobacter nectaris CIP 110549 [AYER]
92081
92156
+
Lys
TTT
[ENA]
¡û
>W141177226
AYER01000007
Gammaproteobacteria
Acinetobacter nectaris CIP 110549 [AYER]
92177
92252
+
Lys
TTT
[ENA]
¡û
>ENV08001230
ABMV01025965
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
17
91
+
Lys
TTT
[ENA]
¡û
>W141439994
JEVW01000053
Gammaproteobacteria
Acinetobacter baumannii 348935 [JEVW]
8603
8678
+
Lys
TTT
[ENA]
¡û
>W141439995
JEVW01000053
Gammaproteobacteria
Acinetobacter baumannii 348935 [JEVW]
8700
8775
+
Lys
TTT
[ENA]
¡û
>W141439996
JEVW01000053
Gammaproteobacteria
Acinetobacter baumannii 348935 [JEVW]
8833
8908
+
Lys
TTT
[ENA]
¡û
>WENV170699533
LGVF01577056
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1334
1409
+
Lys
TTT
[ENA]
¢þ
>WENV170729719
LULG01000613
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
1
76
+
Lys
TTT
[ENA]
¢þ
>WENV170729727
LULG01000698
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
79
4
-
Lys
TTT
[ENA]
¢þ
>WENV170735492
LULL01002693
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
2186
2261
+
Lys
TTT
[ENA]
¢þ
>WENV170735493
LULL01002693
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
2404
2479
+
Lys
TTT
[ENA]
¢þ
>WENV170759432
LUMS01021515
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
490
565
+
Lys
TTT
[ENA]
¢þ
>WENV170760325
LUMT01010186
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
144
219
+
Lys
TTT
[ENA]
¢þ
>WENV170761209
LUMU01019776
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
321
396
+
Lys
TTT
[ENA]
¢þ
>WENV170761367
LUMV01000073
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
9878
9803
-
Lys
TTT
[ENA]
¢þ
>WENV170762081
LUMW01000772
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
8631
8556
-
Lys
TTT
[ENA]
¢þ
>C181092849
CP024011
Gammaproteobacteria
Acinetobacter sp. LoGeW2-3 (CP024011)
756481
756556
+
Lys
TTT
-
¡û
>C181092850
CP024011
Gammaproteobacteria
Acinetobacter sp. LoGeW2-3 (CP024011)
756577
756652
+
Lys
TTT
-
¡û
>C181092851
CP024011
Gammaproteobacteria
Acinetobacter sp. LoGeW2-3 (CP024011)
756710
756785
+
Lys
TTT
-
¡û
>C181133758
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 (CP026420)
2606763
2606838
+
Lys
TTT
-
¡û
>C181133759
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 (CP026420)
2606860
2606935
+
Lys
TTT
-
¡û
>C181133760
CP026420
Gammaproteobacteria
Acinetobacter sp. ACNIH1 (CP026420)
2606993
2607068
+
Lys
TTT
-
¡û
>W1911541190
OOGT01000050
Gammaproteobacteria
Acinetobacter sp. KPC-SM-21 (OOGT)
13027
13102
+
Lys
TTT
[ENA]
¡û
>W1911541191
OOGT01000050
Gammaproteobacteria
Acinetobacter sp. KPC-SM-21 (OOGT)
13125
13200
+
Lys
TTT
[ENA]
¡û
>SRA1001360
SRR001063.324772
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
17
91
+
Lys
TTT
[SRA]
>W1810100869
PGOZ01000006
Gammaproteobacteria
Acinetobacter sp. ANC 5347 (PGOZ)
100868
100943
+
Lys
TTT
[ENA]
¡û
>W1810100870
PGOZ01000006
Gammaproteobacteria
Acinetobacter sp. ANC 5347 (PGOZ)
100964
101039
+
Lys
TTT
[ENA]
¡û
>W1810100871
PGOZ01000006
Gammaproteobacteria
Acinetobacter sp. ANC 5347 (PGOZ)
101098
101173
+
Lys
TTT
[ENA]
¡û
>W1810100952
PGPA01000003
Gammaproteobacteria
Acinetobacter sp. ANC 5324 (PGPA)
246728
246803
+
Lys
TTT
[ENA]
¡û
>W1810100953
PGPA01000003
Gammaproteobacteria
Acinetobacter sp. ANC 5324 (PGPA)
246824
246899
+
Lys
TTT
[ENA]
¡û
>W1810100954
PGPA01000003
Gammaproteobacteria
Acinetobacter sp. ANC 5324 (PGPA)
246958
247033
+
Lys
TTT
[ENA]
¡û
>W1810101065
PGPB01000016
Gammaproteobacteria
Acinetobacter sp. ANC 5318 (PGPB)
26676
26751
+
Lys
TTT
[ENA]
¡û
>W1810101066
PGPB01000016
Gammaproteobacteria
Acinetobacter sp. ANC 5318 (PGPB)
26772
26847
+
Lys
TTT
[ENA]
¡û
>W1810101067
PGPB01000016
Gammaproteobacteria
Acinetobacter sp. ANC 5318 (PGPB)
26906
26981
+
Lys
TTT
[ENA]
¡û
>W1810119056
PHRG01000001
Gammaproteobacteria
Acinetobacter sp. ANC 5044 (PHRG)
813902
813977
+
Lys
TTT
[ENA]
¡û
>W1810119057
PHRG01000001
Gammaproteobacteria
Acinetobacter sp. ANC 5044 (PHRG)
813998
814073
+
Lys
TTT
[ENA]
¡û
>W1810119058
PHRG01000001
Gammaproteobacteria
Acinetobacter sp. ANC 5044 (PHRG)
814132
814207
+
Lys
TTT
[ENA]
¡û
>W1510015948
BBRX01000004
Gammaproteobacteria
Acinetobacter rudis DSM 24031 [BBRX]
15381
15456
+
Lys
TTT
[ENA]
¡û
>W1510015949
BBRX01000004
Gammaproteobacteria
Acinetobacter rudis DSM 24031 [BBRX]
15477
15552
+
Lys
TTT
[ENA]
¡û
>W1511310796
JPQO01000200
Gammaproteobacteria
Acinetobacter sp. HR7 [JPQO]
36091
36016
-
Lys
TTT
[ENA]
¡û
>W1511478238
JWHB01000002
Gammaproteobacteria
Acinetobacter sp. YZS-X1-1 [JWHB]
30241
30166
-
Lys
TTT
[ENA]
¡û
>W1511478239
JWHB01000002
Gammaproteobacteria
Acinetobacter sp. YZS-X1-1 [JWHB]
30144
30069
-
Lys
TTT
[ENA]
¡û
>W1511478240
JWHB01000002
Gammaproteobacteria
Acinetobacter sp. YZS-X1-1 [JWHB]
30011
29936
-
Lys
TTT
[ENA]
¡û
>W1511500957
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
745437
745362
-
Lys
TTT
[ENA]
¡û
>W1511500958
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
745344
745269
-
Lys
TTT
[ENA]
¡û
>W1511500959
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
745204
745129
-
Lys
TTT
[ENA]
¡û
>W1610502553
FLLN01000011
Gammaproteobacteria
Acinetobacter lwoffii (FLLN)
795166
795091
-
Lys
TTT
[ENA]
¡û
>W1610502554
FLLN01000011
Gammaproteobacteria
Acinetobacter lwoffii (FLLN)
795070
794995
-
Lys
TTT
[ENA]
¡û
>W1610502555
FLLN01000011
Gammaproteobacteria
Acinetobacter lwoffii (FLLN)
794936
794861
-
Lys
TTT
[ENA]
¡û
>W1610923295
LSZG01000001
Gammaproteobacteria
Acinetobacter sp. SFC (LSZG)
226602
226677
+
Lys
TTT
[ENA]
¡û
>W1610923296
LSZG01000001
Gammaproteobacteria
Acinetobacter sp. SFC (LSZG)
226695
226770
+
Lys
TTT
[ENA]
¡û
>W1610923297
LSZG01000001
Gammaproteobacteria
Acinetobacter sp. SFC (LSZG)
226835
226910
+
Lys
TTT
[ENA]
¡û
>W1610923388
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB (LSZH)
370858
370783
-
Lys
TTT
[ENA]
¡û
>W1610923389
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB (LSZH)
370762
370687
-
Lys
TTT
[ENA]
¡û
>W1610923390
LSZH01000011
Gammaproteobacteria
Acinetobacter sp. SFB (LSZH)
370622
370547
-
Lys
TTT
[ENA]
¡û
>W1610923462
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA (LSZI)
97439
97364
-
Lys
TTT
[ENA]
¡û
>W1610923463
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA (LSZI)
97343
97268
-
Lys
TTT
[ENA]
¡û
>W1610923464
LSZI01000016
Gammaproteobacteria
Acinetobacter sp. SFA (LSZI)
97205
97130
-
Lys
TTT
[ENA]
¡û
>W1610923506
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD (LSZJ)
532859
532934
+
Lys
TTT
[ENA]
¡û
>W1610923507
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD (LSZJ)
532955
533030
+
Lys
TTT
[ENA]
¡û
>W1610923508
LSZJ01000001
Gammaproteobacteria
Acinetobacter sp. SFD (LSZJ)
533093
533168
+
Lys
TTT
[ENA]
¡û
>W1610937433
LUOR01000006
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S32_B1 (LUOR)
39677
39752
+
Lys
TTT
[ENA]
¡û
>W1610937434
LUOR01000006
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S32_B1 (LUOR)
39895
39970
+
Lys
TTT
[ENA]
¡û
>W1610937582
LUOV01000053
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 (LUOV)
9878
9803
-
Lys
TTT
[ENA]
¡û
>W1710495952
FLLN01000011
Gammaproteobacteria
Acinetobacter lwoffii (FLLN)
795166
795091
-
Lys
TTT
[ENA]
¡û
>W1710495953
FLLN01000011
Gammaproteobacteria
Acinetobacter lwoffii (FLLN)
795070
794995
-
Lys
TTT
[ENA]
¡û
>W1710495954
FLLN01000011
Gammaproteobacteria
Acinetobacter lwoffii (FLLN)
794936
794861
-
Lys
TTT
[ENA]
¡û
>W1710511119
FMYL01000007
Gammaproteobacteria
Acinetobacter boissieri (FMYL)
84528
84603
+
Lys
TTT
[ENA]
¡û
>W1710511120
FMYL01000007
Gammaproteobacteria
Acinetobacter boissieri (FMYL)
84627
84702
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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