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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289571 (23 seq.)
>W131180969
ARNN01000039
Betaproteobacteria
Vitreoscilla stercoraria DSM 513 [ARNN]
208282
208207
-
Met
CAT
[ENA]
¡û
>WENV180114189
OAPS01000167
[OAPS] marine metagenome; sea water
2225
2150
-
Ile2
CAT
[ENA]
¢þ
>WENV180359424
OBNR01079766
[OBNR] marine metagenome; Seawater_00002010_00002149
165
240
+
Ile2
CAT
[ENA]
¢þ
>WENV180361365
OBNV01016144
[OBNV] marine metagenome; ENVO:00002042
105
180
+
Ile2
CAT
[ENA]
¢þ
>WENV180392397
OBPO01061206
[OBPO] marine metagenome; seawater
219
144
-
Ile2
CAT
[ENA]
¢þ
>WENV180397386
OBPY01000839
[OBPY] marine metagenome; Mesotrophic water
2014
1939
-
Ile2
CAT
[ENA]
¢þ
>WENV181122446
OEFM01014621
[OEFM] marine metagenome; ENVO:00000569 for seawater
310
385
+
Ile2
CAT
[ENA]
¢þ
>WENV182541315
OJAT01001714
[OJAT] seawater metagenome; Sea water
548
623
+
Ile2
CAT
[ENA]
¢þ
>WENV182545855
OJBN01040137
[OJBN] seawater metagenome; Sea water
115
190
+
Ile2
CAT
[ENA]
¢þ
>WENV182552066
OJCJ01004914
[OJCJ] seawater metagenome; Sea water
347
272
-
Ile2
CAT
[ENA]
¢þ
>WENV182554282
OJCU01000524
[OJCU] seawater metagenome; Sea water
2840
2765
-
Ile2
CAT
[ENA]
¢þ
>WENV182589460
OJID01004678
[OJID] seawater metagenome; Sea water
660
735
+
Ile2
CAT
[ENA]
¢þ
>WENV183698779
OZSS01004512
[OZSS] metagenome; Seawater sample
5040
5115
+
Ile2
CAT
[ENA]
¢þ
>WENV170313434
CESN01018677
[CESN] marine metagenome genome assembly TARA_098_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2204
2279
+
Met
CAT
[ENA]
¢þ
>WENV170331875
CESW01103402
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
707
782
+
Met
CAT
[ENA]
¢þ
>WENV170530785
CEWK01058001
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
132
207
+
Met
CAT
[ENA]
¢þ
>WENV170594172
FUFK011206288
[FUFK] metagenome; unknown
224
149
-
Met
CAT
[ENA]
¢þ
>WENV170661489
JXWV01039282
[JXWV] soil metagenome; rice field; organic FYM Plot
453
380
-
Met
CAT
[ENA]
¢þ
>WENV170951546
MEHZ011559622
[MEHZ] marine metagenome; marine surface water
1510
1585
+
Met
CAT
[ENA]
¢þ
>C181038301
CP019644
Betaproteobacteria
Vitreoscilla sp. C1 [CP019644]
1429705
1429780
+
Met
CAT
-
¡û
>W1810625341
QHJQ01000004
Verrucomicrobiota
Coraliomargarita sinensis WN38 [QHJQ]
176922
176847
-
Met
CAT
[ENA]
¡û
>WENV038020
AACY021901767
Marine microbial communities from Global Ocean Sampling (GOS)
196
273
+
Met
CAT
[ENA]
>WENV063250
AACY023497524
Marine microbial communities from Global Ocean Sampling (GOS)
1075
998
-
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK