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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289654 (67 seq.)
>W1711421639
MHZH01000126
Gammaproteobacteria
Pseudomonadales bacterium GWC1_66_9 [MHZH]
1634
1710
+
Arg
ACG
[ENA]
¡û
>W1711421640
MHZH01000126
Gammaproteobacteria
Pseudomonadales bacterium GWC1_66_9 [MHZH]
1776
1852
+
Arg
ACG
[ENA]
¡û
>W1711945848
NBMS01000047
Gammaproteobacteria
Pseudomonas sp. A46 [NBMS]
72191
72267
+
Arg
ACG
[ENA]
¡û
>W1711945849
NBMS01000047
Gammaproteobacteria
Pseudomonas sp. A46 [NBMS]
72340
72416
+
Arg
ACG
[ENA]
¡û
>C171044830
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
4595370
4595294
-
Arg
ACG
-
¡û
>C171044831
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
4595223
4595147
-
Arg
ACG
-
¡û
>W131231070
AUIE01000001
Gammaproteobacteria
Pseudomonas resinovorans DSM 21078 [AUIE]
151189
151265
+
Arg
ACG
[ENA]
¡û
>W131231071
AUIE01000001
Gammaproteobacteria
Pseudomonas resinovorans DSM 21078 [AUIE]
151336
151412
+
Arg
ACG
[ENA]
¡û
>w002059
AAAU03000002
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAAU]
84688
84766
+
Arg
ACG
[ENA]
¡û
>W141076149
ATCP01000135
Gammaproteobacteria
Pseudomonas alcaligenes OT 69 [ATCP]
87098
87174
+
Arg
ACG
[ENA]
¡û
>W141076150
ATCP01000135
Gammaproteobacteria
Pseudomonas alcaligenes OT 69 [ATCP]
87248
87324
+
Arg
ACG
[ENA]
¡û
>WENV181731749
OGQD01002973
[OGQD] human gut metagenome; faeces
2304
2380
+
Arg
ACG
[ENA]
¢þ
>WENV181731750
OGQD01002973
[OGQD] human gut metagenome; faeces
2453
2529
+
Arg
ACG
[ENA]
¢þ
>WENV181844789
OGVW01030922
[OGVW] freshwater metagenome; freshwater
498
574
+
Arg
ACG
[ENA]
¢þ
>W141230755
BATI01000012
Gammaproteobacteria
Pseudomonas alcaligenes NBRC 14159 [BATI]
48369
48293
-
Arg
ACG
[ENA]
¡û
>W141231068
BATO01000008
Gammaproteobacteria
Pseudomonas alcaligenes MRY13-0052 [BATO]
98758
98682
-
Arg
ACG
[ENA]
¡û
>W141231069
BATO01000008
Gammaproteobacteria
Pseudomonas alcaligenes MRY13-0052 [BATO]
98608
98532
-
Arg
ACG
[ENA]
¡û
>WENV170966607
MTEY01001027
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
2
78
+
Arg
ACG
[ENA]
¢þ
>C181000725
AP014862
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AP014862]
1502652
1502728
+
Arg
ACG
-
¡û
>C181000726
AP014862
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AP014862]
1502801
1502877
+
Arg
ACG
-
¡û
>C181011108
CP011835
Gammaproteobacteria
Azotobacter chroococcum B3 [CP011835]
3038344
3038268
-
Arg
ACG
-
¡û
>C181011109
CP011835
Gammaproteobacteria
Azotobacter chroococcum B3 [CP011835]
3038202
3038126
-
Arg
ACG
-
¡û
>C191091992
CP032616
Gammaproteobacteria
Pseudomonas sp. DY-1 [CP032616]
2583512
2583436
-
Arg
ACG
-
¡û
>C191091993
CP032616
Gammaproteobacteria
Pseudomonas sp. DY-1 [CP032616]
2583364
2583288
-
Arg
ACG
-
¡û
>W09102097
AAHH01000002
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAHH]
84689
84765
+
Arg
ACG
[ENA]
¡û
>C09100910
CP001157
Gammaproteobacteria
Azotobacter vinelandii DJ DJ; ATCC BAA-1303 [CP001157]
3517591
3517515
-
Arg
ACG
[Ensembl]
¡û
>W1910810363
MUJY01000131
Gammaproteobacteria
Pseudomonas sp. PIC25 [MUJY]
5922
5846
-
Arg
ACG
[ENA]
¡û
>W1910810381
MUJY01000181
Gammaproteobacteria
Pseudomonas sp. PIC25 [MUJY]
83
7
-
Arg
ACG
[ENA]
¡û
>W1910810753
MUNN01000044
Gammaproteobacteria
Pseudomonas indica PIC105 [MUNN]
4
80
+
Arg
ACG
[ENA]
¡û
>W1910810768
MUNN01000107
Gammaproteobacteria
Pseudomonas indica PIC105 [MUNN]
20101
20177
+
Arg
ACG
[ENA]
¡û
>W1911246952
NSLB01000002
Gammaproteobacteria
Pseudomonas sp. HAR-UPW-AIA-41 [NSLB]
163966
163890
-
Arg
ACG
[ENA]
¡û
>W1810670654
QJRX01000004
Gammaproteobacteria
Pseudomonas alcaligenes MB-090714 [QJRX]
210173
210097
-
Arg
ACG
[ENA]
¡û
>W1810670655
QJRX01000004
Gammaproteobacteria
Pseudomonas alcaligenes MB-090714 [QJRX]
210024
209948
-
Arg
ACG
[ENA]
¡û
>W1810680757
QKRU01000029
Gammaproteobacteria
Pseudomonas sp. 57B-090624 [QKRU]
34875
34951
+
Arg
ACG
[ENA]
¡û
>W1810680758
QKRU01000029
Gammaproteobacteria
Pseudomonas sp. 57B-090624 [QKRU]
35024
35100
+
Arg
ACG
[ENA]
¡û
>C151001286
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
4650463
4650387
-
Arg
ACG
[Ensembl]
¡û
>C151001287
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
4650315
4650239
-
Arg
ACG
[Ensembl]
¡û
>C151068419
CP010415
Gammaproteobacteria
Azotobacter chroococcum NCIMB 8003 [CP010415]
1531026
1531102
+
Arg
ACG
[Ensembl]
¡û
>C151068420
CP010415
Gammaproteobacteria
Azotobacter chroococcum NCIMB 8003 [CP010415]
1531168
1531244
+
Arg
ACG
[Ensembl]
¡û
>W1511530343
JYKO01000002
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
486886
486810
-
Arg
ACG
[ENA]
¡û
>C161077579
CP014784
Gammaproteobacteria
Pseudomonas alcaligenes NEB 585 [CP014784]
3185847
3185771
-
Arg
ACG
-
¡û
>C161077580
CP014784
Gammaproteobacteria
Pseudomonas alcaligenes NEB 585 [CP014784]
3185698
3185622
-
Arg
ACG
-
¡û
>W121064909
AJMR01000223
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AJMR]
96280
96204
-
Arg
ACG
[ENA]
¡û
>W121064910
AJMR01000223
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AJMR]
96131
96055
-
Arg
ACG
[ENA]
¡û
>W1610070305
BCTD01000050
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
116
40
-
Arg
ACG
[ENA]
¡û
>C131014919
CP005094
Gammaproteobacteria
Azotobacter vinelandii CA [CP005094]
3517602
3517526
-
Arg
ACG
[Ensembl]
¡û
>C131014983
CP005095
Gammaproteobacteria
Azotobacter vinelandii CA6 [CP005095]
3517590
3517514
-
Arg
ACG
[Ensembl]
¡û
>W1710067678
BCTD01000050
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
116
40
-
Arg
ACG
[ENA]
¡û
>W1710075963
BDAC01000024
Gammaproteobacteria
Pseudomonas indica NBRC 103045 [BDAC]
61128
61052
-
Arg
ACG
[ENA]
¡û
>W1710075964
BDAC01000024
Gammaproteobacteria
Pseudomonas indica NBRC 103045 [BDAC]
60978
60902
-
Arg
ACG
[ENA]
¡û
>W1710084496
BDMA01000092
Gammaproteobacteria
Pseudomonas resinovorans [BDMA]
12543
12467
-
Arg
ACG
[ENA]
¡û
>W1710084497
BDMA01000092
Gammaproteobacteria
Pseudomonas resinovorans [BDMA]
12394
12318
-
Arg
ACG
[ENA]
¡û
>W1710519935
FNFD01000022
Gammaproteobacteria
Pseudomonas indica [FNFD]
61133
61057
-
Arg
ACG
[ENA]
¡û
>W1710519936
FNFD01000022
Gammaproteobacteria
Pseudomonas indica [FNFD]
60983
60907
-
Arg
ACG
[ENA]
¡û
>W1710541736
FNYO01000009
Gammaproteobacteria
Azotobacter beijerinckii [FNYO]
102565
102641
+
Arg
ACG
[ENA]
¡û
>W1710541857
FNYQ01000070
Gammaproteobacteria
Azotobacter beijerinckii [FNYQ]
19990
20066
+
Arg
ACG
[ENA]
¡û
>W1710550533
FOFJ01000013
Gammaproteobacteria
Azotobacter beijerinckii [FOFJ]
49987
49911
-
Arg
ACG
[ENA]
¡û
>W1710550534
FOFJ01000013
Gammaproteobacteria
Azotobacter beijerinckii [FOFJ]
49846
49770
-
Arg
ACG
[ENA]
¡û
>W1710556644
FOKJ01000012
Gammaproteobacteria
Azotobacter beijerinckii [FOKJ]
24421
24497
+
Arg
ACG
[ENA]
¡û
>W1710556645
FOKJ01000012
Gammaproteobacteria
Azotobacter beijerinckii [FOKJ]
24562
24638
+
Arg
ACG
[ENA]
¡û
>W1710567633
FOSX01000012
Gammaproteobacteria
Azotobacter beijerinckii [FOSX]
24119
24195
+
Arg
ACG
[ENA]
¡û
>W1710567634
FOSX01000012
Gammaproteobacteria
Azotobacter beijerinckii [FOSX]
24260
24336
+
Arg
ACG
[ENA]
¡û
>W1710581960
FPKM01000004
Gammaproteobacteria
Azotobacter vinelandii [FPKM]
114938
115014
+
Arg
ACG
[ENA]
¡û
>W1710596478
FTMP01000002
Gammaproteobacteria
Pseudomonas alcaligenes [FTMP]
94842
94766
-
Arg
ACG
[ENA]
¡û
>W1710596479
FTMP01000002
Gammaproteobacteria
Pseudomonas alcaligenes [FTMP]
94693
94617
-
Arg
ACG
[ENA]
¡û
>W1710598236
FTNW01000001
Gammaproteobacteria
Pseudomonas alcaligenes [FTNW]
200255
200331
+
Arg
ACG
[ENA]
¡û
>W1710598237
FTNW01000001
Gammaproteobacteria
Pseudomonas alcaligenes [FTNW]
200404
200480
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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