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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289658 (25 seq.)
>W1710815500
LKKJ01000001
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
94586
94661
+
Thr
CGT
[ENA]
¡û
>W1710815614
LKKL01000001
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
293904
293829
-
Thr
CGT
[ENA]
¡û
>W1711353373
MDEM01000030
Gammaproteobacteria
Stutzerimonas xanthomarina [MDEM]
233290
233365
+
Thr
CGT
[ENA]
¡û
>W131225693
AUDU01000019
Gammaproteobacteria
Stutzerimonas azotifigens DSM 17556 [AUDU]
30670
30595
-
Thr
CGT
[ENA]
¡û
>W141075524
ATAR01000007
Gammaproteobacteria
Stutzerimonas stutzeri MF28 [ATAR]
158970
158895
-
Thr
CGT
[ENA]
¡û
>WENV170263321
CERC01035197
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2895
2970
+
Thr
CGT
[ENA]
¢þ
>WENV170264067
CERD01001861
[CERD] marine metagenome genome assembly TARA_070_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6266
6341
+
Thr
CGT
[ENA]
¢þ
>WENV170356074
CETJ01003795
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
41222
41147
-
Thr
CGT
[ENA]
¢þ
>WENV170779570
LZQQ01000019
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
17303
17378
+
Thr
CGT
[ENA]
¢þ
>C191044701
CP026511
Gammaproteobacteria
Pseudomonadaceae bacterium SI-3 [CP026511]
1351735
1351810
+
Thr
CGT
-
¡û
>W1810156406
PJBG01000067
Gammaproteobacteria
Pseudomonas sp. Choline-3u-10 [PJBG]
246581
246506
-
Thr
CGT
[ENA]
¡û
>W1810224458
POUL01000003
Gammaproteobacteria
Stutzerimonas stutzeri 4C29 [POUL]
411144
411219
+
Thr
CGT
[ENA]
¡û
>W1810225026
POUU01000007
Gammaproteobacteria
Stutzerimonas stutzeri DSM 17088 [POUU]
65208
65133
-
Thr
CGT
[ENA]
¡û
>W1810225118
POUW01000006
Gammaproteobacteria
Stutzerimonas stutzeri 28a3 [POUW]
54559
54634
+
Thr
CGT
[ENA]
¡û
>W1810722090
QNTV01000002
Gammaproteobacteria
Stutzerimonas zhaodongensis SST2 [QNTV]
345739
345664
-
Thr
CGT
[ENA]
¡û
>W1810743365
QORI01000004
Gammaproteobacteria
Pseudomonas sp. SST3 [QORI]
210212
210137
-
Thr
CGT
[ENA]
¡û
>C151023525
CP007441
Gammaproteobacteria
Stutzerimonas stutzeri 28a24 [CP007441]
1300548
1300623
+
Thr
CGT
[Ensembl]
¡û
>W1511489997
JWTL01000004
Gammaproteobacteria
Pseudomonas sp. 10B238 [JWTL]
375925
375850
-
Thr
CGT
[ENA]
¡û
>W1511527577
JYHV01000013
Gammaproteobacteria
Stutzerimonas stutzeri NT0128 [JYHV]
62299
62374
+
Thr
CGT
[ENA]
¡û
>C121015331
CP003725
Gammaproteobacteria
Stutzerimonas stutzeri DSM 10701 [CP003725]
1190363
1190438
+
Thr
CGT
[Ensembl]
¡û
>C161000956
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
3751732
3751657
-
Thr
CGT
-
¡û
>C161089985
CP015641
Gammaproteobacteria
Stutzerimonas stutzeri 273 [CP015641]
3299906
3299981
+
Thr
CGT
[Ensembl]
¡û
>W1610679597
LKKJ01000001
Gammaproteobacteria
Pseudomonas sp. TTU2014-066ASC [LKKJ]
94586
94661
+
Thr
CGT
[ENA]
¡û
>W1610679711
LKKL01000001
Gammaproteobacteria
Pseudomonas sp. TTU2014-096BSC [LKKL]
293904
293829
-
Thr
CGT
[ENA]
¡û
>W1710586227
FQXA01000003
Gammaproteobacteria
Stutzerimonas xanthomarina DSM 18231 [FQXA]
501526
501451
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK