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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289664 (33 seq.)
>W1710866374
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
746254
746179
-
Val
TAC
[ENA]
¡û
>W1710871900
LMLO01000021
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
827556
827631
+
Val
TAC
[ENA]
¡û
>W131111770
APMO01000005
Alphaproteobacteria
Rickettsia prowazekii str. Cairo 3 [APMO]
36572
36497
-
Val
TAC
[ENA]
¡û
>W131045798
AMRT01000004
Alphaproteobacteria
Rickettsia japonica YH [AMRT]
13449
13374
-
Val
TAC
[ENA]
¡û
>C171035095
CP015012
Alphaproteobacteria
Rickettsia amblyommatis [CP015012]
161419
161344
-
Val
TAC
-
¡û
>C019375
AE017197
Alphaproteobacteria
Rickettsia typhi str. Wilmington [AE017197]
814584
814509
-
Val
TAC
[Ensembl]
¡û
>WENV180057535
MPLX02010250
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
12679
12604
-
Val
TAC
[ENA]
¢þ
>w002995
AABW01000001
Alphaproteobacteria
Rickettsia sibirica 246 [AABW]
1008593
1008670
+
Val
TAC
[ENA]
¡û
>W141147972
AWXL01000021
Alphaproteobacteria
Rickettsia gravesii gravesii BWI-1 [AWXL]
22718
22643
-
Val
TAC
[ENA]
¡û
>WENV170395208
CEUC01090708
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
535
610
+
Val
TAC
[ENA]
¢þ
>WENV170416805
CEUL01146225
[CEUL] marine metagenome genome assembly TARA_124_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
238
163
-
Val
TAC
[ENA]
¢þ
>WENV170467824
CEVE01283222
[CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
238
163
-
Val
TAC
[ENA]
¢þ
>WENV170519851
CEWE01260853
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
6238
6163
-
Val
TAC
[ENA]
¢þ
>WENV170843081
MDSZ01253854
[MDSZ] marine metagenome; seawater
3267
3342
+
Val
TAC
[ENA]
¢þ
>WENV170852854
MDTA01158474
[MDTA] marine metagenome; seawater
17821
17746
-
Val
TAC
[ENA]
¢þ
>WENV170853334
MDTA01167656
[MDTA] marine metagenome; seawater
1984
2059
+
Val
TAC
[ENA]
¢þ
>WENV170900307
MDTD01152376
[MDTD] marine metagenome; seawater
8990
9065
+
Val
TAC
[ENA]
¢þ
>C191225768
LS992663
Alphaproteobacteria
Rickettsia typhi [LS992663]
814236
814161
-
Val
TAC
-
¡û
>C151094948
CP012420
Alphaproteobacteria
Rickettsia amblyommatis Ac37 [CP012420]
1141082
1141007
-
Val
TAC
-
¡û
>C11118807
CP001584
Alphaproteobacteria
Rickettsia prowazekii str. Rp22 [CP001584]
806256
806181
-
Val
TAC
[Ensembl]
¡û
>W1511574270
LANR01000001
Alphaproteobacteria
Rickettsia amblyommatis amblyommii str. Ac/Pa [LANR]
1363576
1363501
-
Val
TAC
[ENA]
¡û
>C121012175
CP003391
Alphaproteobacteria
Rickettsia prowazekii str. Chernikova [CP003391]
804461
804386
-
Val
TAC
[Ensembl]
¡û
>C121012241
CP003393
Alphaproteobacteria
Rickettsia prowazekii str. BuV67-CWPP [CP003393]
806338
806263
-
Val
TAC
[Ensembl]
¡û
>C121012274
CP003394
Alphaproteobacteria
Rickettsia prowazekii str. Dachau [CP003394]
804480
804405
-
Val
TAC
[Ensembl]
¡û
>C121012314
CP003395
Alphaproteobacteria
Rickettsia prowazekii str. GvV257 [CP003395]
36570
36495
-
Val
TAC
[Ensembl]
¡û
>C121012371
CP003397
Alphaproteobacteria
Rickettsia typhi str. TH1527 [CP003397]
814680
814605
-
Val
TAC
[Ensembl]
¡û
>C121012404
CP003398
Alphaproteobacteria
Rickettsia typhi str. B9991CWPP [CP003398]
815248
815173
-
Val
TAC
[Ensembl]
¡û
>C161078746
CP014865
Alphaproteobacteria
Rickettsia prowazekii Naples-1 [CP014865]
806417
806342
-
Val
TAC
-
¡û
>W121033386
AHIZ01000006
Alphaproteobacteria
Rickettsia sibirica subsp. sibirica BJ-90 [AHIZ]
42590
42515
-
Val
TAC
[ENA]
¡û
>C131014579
CP004888
Alphaproteobacteria
Rickettsia prowazekii str. NMRC Madrid E [CP004888]
489139
489214
+
Val
TAC
[Ensembl]
¡û
>C131014618
CP004889
Alphaproteobacteria
Rickettsia prowazekii str. Breinl [CP004889]
1072726
1072801
+
Val
TAC
[Ensembl]
¡û
>W1610728720
LMHK01000001
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
746254
746179
-
Val
TAC
[ENA]
¡û
>W1610734246
LMLO01000021
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
827556
827631
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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