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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289671 (39 seq.)
>W1710882975
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
1021549
1021624
+
Val
TAC
[ENA]
¡û
>W131222236
AUBC01000007
Alphaproteobacteria
Salinarimonas rosea DSM 21201 [AUBC]
180850
180775
-
Val
TAC
[ENA]
¡û
>W131229853
AUHC01000005
Alphaproteobacteria
Erythrobacter cryptus DSM 12079 [AUHC]
175206
175281
+
Val
TAC
[ENA]
¡û
>C171101500
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
1988473
1988398
-
Val
TAC
-
¡û
>WENV180030019
FTJL01067242
[FTJL] metagenome; soil
253
328
+
Val
TAC
[ENA]
¢þ
>WENV180065960
MPLY02098990
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
123
48
-
Val
TAC
[ENA]
¢þ
>WENV180284451
OBID01043123
[OBID] metagenome; sludge
351
426
+
Val
TAC
[ENA]
¢þ
>WENV180293776
OBIY01001123
[OBIY] beach sand metagenome; beach sand
76
1
-
Val
TAC
[ENA]
¢þ
>WENV180294529
OBIY01219668
[OBIY] beach sand metagenome; beach sand
72
-1
-
Val
TAC
[ENA]
¢þ
>WENV180376055
OBOL01193522
[OBOL] marine metagenome; Surface water
112
184
+
Val
TAC
[ENA]
¢þ
>WENV180378806
OBOO01152971
[OBOO] marine metagenome; ENVO 00002150
123
198
+
Val
TAC
[ENA]
¢þ
>WENV180690223
OCZS010000851
[OCZS] soil metagenome; soil
9635
9710
+
Val
TAC
[ENA]
¢þ
>WENV180691280
OCZS010090845
[OCZS] soil metagenome; soil
76
1
-
Val
TAC
[ENA]
¢þ
>WENV181163673
OEIQ01167541
[OEIQ] soil metagenome; soil
123
198
+
Val
TAC
[ENA]
¢þ
>WENV181166429
OEIU01000281
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1877
1952
+
Val
TAC
[ENA]
¢þ
>WENV181167661
OEIU01055437
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
933
1008
+
Val
TAC
[ENA]
¢þ
>C08000301
AP009384
Alphaproteobacteria
Azorhizobium caulinodans ORS 571 [AP009384]
1845381
1845456
+
Val
TAC
[Ensembl]
¡û
>W141241674
CAHM01000035
Alphaproteobacteria
Microvirga massiliensis JC119 [CAHM]
42583
42658
+
Val
TAC
[ENA]
¡û
>WENV182547549
OJBS01026259
[OJBS] seawater metagenome; Sea water
153
78
-
Val
TAC
[ENA]
¢þ
>WENV182593078
OJIS01036429
[OJIS] seawater metagenome; Sea water
521
446
-
Val
TAC
[ENA]
¢þ
>C08006458
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
4833502
4833430
-
Val
TAC
[Ensembl]
¡û
>W141278478
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
2383263
2383338
+
Val
TAC
[ENA]
¡û
>WENV170266554
CERE01086278
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
436
511
+
Val
TAC
[ENA]
¢þ
>WENV170429198
CEUR01037369
[CEUR] marine metagenome genome assembly TARA_123_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4745
4820
+
Val
TAC
[ENA]
¢þ
>WENV170530813
CEWK01061324
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
424
349
-
Val
TAC
[ENA]
¢þ
>WENV170577982
FSSH01004552
[FSSH] freshwater metagenome; drinking water
15378
15453
+
Val
TAC
[ENA]
¢þ
>WENV170649215
JRHI01010482
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
76
1
-
Val
TAC
[ENA]
¢þ
>WENV170765990
LWDU01040205
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
17593
17518
-
Val
TAC
[ENA]
¢þ
>WENV170993251
MWWB01235039
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
221
296
+
Val
TAC
[ENA]
¢þ
>C181001067
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
3220963
3220888
-
Val
TAC
-
¡û
>W141819164
JQMC01000003
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
144631
144556
-
Val
TAC
[ENA]
¡û
>W1810579415
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
553499
553424
-
Val
TAC
[ENA]
¡û
>C151086715
CP011805
Alphaproteobacteria
Pelagerythrobacter marensis KCTC 22370 [CP011805]
1300154
1300229
+
Val
TAC
[Ensembl]
¡û
>W1510019393
BBWU01000001
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
131923
131998
+
Val
TAC
[ENA]
¡û
>W1510081363
CDSD01000046
Alphaproteobacteria
Microvirga massiliensis JC119 [CDSD]
42583
42658
+
Val
TAC
[ENA]
¡û
>W1511352555
JROH01000003
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
128943
129018
+
Val
TAC
[ENA]
¡û
>W1511400870
JTHF01000001
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
14850
14775
-
Val
TAC
[ENA]
¡û
>WENV060625
AACY023404667
Marine microbial communities from Global Ocean Sampling (GOS)
925
848
-
Val
TAC
[ENA]
>W1610744901
LMVG01000001
Alphaproteobacteria
Pelagerythrobacter marensis [LMVG]
1021549
1021624
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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