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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289738 (80 seq.)
>W1711187736
LWPS01000102
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
12304
12379
+
Thr
GGT
[ENA]
¡û
>W1711294503
LZZL01000080
Bacillota
Clostridium sp. BL-8 [LZZL]
177
102
-
Thr
GGT
[ENA]
¡û
>W1711294523
LZZM01000053
Bacillota
Clostridium puniceum [LZZM]
25233
25308
+
Thr
GGT
[ENA]
¡û
>W1711902836
MZGT01000001
Bacillota
Clostridium chromiireducens [MZGT]
11425
11500
+
Thr
GGT
[ENA]
¡û
>C171021792
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
217203
217128
-
Thr
GGT
-
¡û
>C171047537
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
192267
192342
+
Thr
GGT
-
¡û
>W131001756
AGYK01000018
Bacillota
Clostridium butyricum 60E.3 [AGYK]
28928
29003
+
Thr
GGT
[ENA]
¡û
>W131110796
APKZ01000045
Bacillota
Clostridium butyricum DKU-01 [APKZ]
131741
131666
-
Thr
GGT
[ENA]
¡û
>W131156823
AQQF01000139
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
209
134
-
Thr
GGT
[ENA]
¡û
>W131232804
AUJN01000029
Bacillota
Clostridium butyricum AGR2140 [AUJN]
25913
25988
+
Thr
GGT
[ENA]
¡û
>WENV180096954
MTBK01157325
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
223
298
+
Thr
GGT
[ENA]
¢þ
>WENV180191238
OAXB01008270
[OAXB] human gut metagenome; faeces
39
114
+
Thr
GGT
[ENA]
¢þ
>WENV180278201
OBHX01002674
[OBHX] metagenome; feces
130
55
-
Thr
GGT
[ENA]
¢þ
>WENV180333294
OBLF01000484
[OBLF] metagenome; feces
25956
26031
+
Thr
GGT
[ENA]
¢þ
>WENV180347543
OBLO01000521
[OBLO] metagenome; feces
16153
16078
-
Thr
GGT
[ENA]
¢þ
>WENV180413533
OBVB01004157
[OBVB] human gut metagenome; faeces
1181
1106
-
Thr
GGT
[ENA]
¢þ
>W141039543
ALXI01000140
Bacillota
Clostridium sp. Maddingley MBC34-26 [ALXI]
25116
25191
+
Thr
GGT
[ENA]
¡û
>WENV180447302
OBXC01051750
[OBXC] human gut metagenome; faeces
129
204
+
Thr
GGT
[ENA]
¢þ
>WENV181555198
OGIT01000100
[OGIT] metagenome; Human gut stool
37085
37010
-
Thr
GGT
[ENA]
¢þ
>WENV181798402
OGRV01000154
[OGRV] human gut metagenome; fecal sample 3 from infant 4
26083
26158
+
Thr
GGT
[ENA]
¢þ
>WENV181798795
OGRX01000310
[OGRX] human gut metagenome; fecal sample 2 from infant 8
23231
23306
+
Thr
GGT
[ENA]
¢þ
>WENV181801439
OGSB01000291
[OGSB] human gut metagenome; fecal sample 5 from infant 3
25955
26030
+
Thr
GGT
[ENA]
¢þ
>WENV181801920
OGSC01000348
[OGSC] human gut metagenome; fecal sample 8 from infant 5
26082
26157
+
Thr
GGT
[ENA]
¢þ
>WENV181805050
OGSH01000409
[OGSH] human gut metagenome; fecal sample 5 from infant 6
23231
23306
+
Thr
GGT
[ENA]
¢þ
>WENV181805374
OGSI01000243
[OGSI] human gut metagenome; fecal sample 4 from infant 8
26114
26189
+
Thr
GGT
[ENA]
¢þ
>WENV181805782
OGSJ01000498
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
968
893
-
Thr
GGT
[ENA]
¢þ
>WENV181807141
OGSN01005372
[OGSN] human gut metagenome; fecal sample 7 from infant 8
190
115
-
Thr
GGT
[ENA]
¢þ
>WENV181807791
OGSQ01000142
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
23231
23306
+
Thr
GGT
[ENA]
¢þ
>WENV181809522
OGST01000409
[OGST] human gut metagenome; fecal sample 7 from infant 6
26082
26157
+
Thr
GGT
[ENA]
¢þ
>WENV181810583
OGSV01000283
[OGSV] human gut metagenome; fecal sample 4 from infant 3
25955
26030
+
Thr
GGT
[ENA]
¢þ
>WENV181811005
OGSX01000747
[OGSX] human gut metagenome; fecal sample 1 from infant 8
190
115
-
Thr
GGT
[ENA]
¢þ
>WENV181811247
OGSY01000352
[OGSY] human gut metagenome; fecal sample 5 from infant 8
26082
26157
+
Thr
GGT
[ENA]
¢þ
>WENV181811658
OGSZ01000245
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
26082
26157
+
Thr
GGT
[ENA]
¢þ
>WENV181813756
OGTD01000582
[OGTD] human gut metagenome; fecal sample 1 from infant 3
1332
1257
-
Thr
GGT
[ENA]
¢þ
>WENV181813996
OGTE01000139
[OGTE] human gut metagenome; fecal sample 2 from infant 3
190
115
-
Thr
GGT
[ENA]
¢þ
>WENV181814472
OGTG01000198
[OGTG] human gut metagenome; fecal sample 1 from infant 4
26083
26158
+
Thr
GGT
[ENA]
¢þ
>WENV181815072
OGTI01000537
[OGTI] human gut metagenome; fecal sample 5 from infant 1
190
115
-
Thr
GGT
[ENA]
¢þ
>WENV181817472
OGTN01000152
[OGTN] human gut metagenome; fecal sample 5 from infant 4
23237
23312
+
Thr
GGT
[ENA]
¢þ
>WENV181818306
OGTS01000177
[OGTS] human gut metagenome; fecal sample 4 from infant 4
26083
26158
+
Thr
GGT
[ENA]
¢þ
>WENV181818617
OGTT01000435
[OGTT] human gut metagenome; fecal sample 6 from infant 8
190
115
-
Thr
GGT
[ENA]
¢þ
>WENV181818903
OGTU01000153
[OGTU] human gut metagenome; fecal sample 6 from infant 4
815
740
-
Thr
GGT
[ENA]
¢þ
>WENV181822903
OGUH01000208
[OGUH] human gut metagenome; fecal sample 3 from infant 3
15738
15663
-
Thr
GGT
[ENA]
¢þ
>W141206222
AZLX01000015
Bacillota
Clostridium butyricum DORA_1 [AZLX]
223
148
-
Thr
GGT
[ENA]
¡û
>W141259007
CBYK010000013
Bacillota
Clostridium butyricum [CBYK]
25644
25719
+
Thr
GGT
[ENA]
¡û
>WENV182824058
OKBZ01001315
[OKBZ] human gut metagenome; human gut
1355
1280
-
Thr
GGT
[ENA]
¢þ
>WENV182826941
OKCW01000237
[OKCW] human gut metagenome; human gut
3833
3908
+
Thr
GGT
[ENA]
¢þ
>WENV182841544
OKHW01000125
[OKHW] human gut metagenome; human gut
287
362
+
Thr
GGT
[ENA]
¢þ
>WENV182847936
OKKE01000480
[OKKE] human gut metagenome; human gut
6752
6827
+
Thr
GGT
[ENA]
¢þ
>WENV182858230
OKOC01000434
[OKOC] human gut metagenome; human gut
5035
4960
-
Thr
GGT
[ENA]
¢þ
>WENV182864694
OKQE01000203
[OKQE] human gut metagenome; human gut
2788
2863
+
Thr
GGT
[ENA]
¢þ
>WENV182944734
OKVJ01001219
[OKVJ] human gut metagenome; human gut
8624
8699
+
Thr
GGT
[ENA]
¢þ
>WENV182949865
OKVQ01000824
[OKVQ] human gut metagenome; human gut
1446
1371
-
Thr
GGT
[ENA]
¢þ
>WENV182950551
OKVS01001221
[OKVS] human gut metagenome; human gut
1554
1479
-
Thr
GGT
[ENA]
¢þ
>WENV182952953
OKVX01000883
[OKVX] human gut metagenome; human gut
212
137
-
Thr
GGT
[ENA]
¢þ
>WENV183067055
OLIL01006235
[OLIL] metagenome; faeces
808
883
+
Thr
GGT
[ENA]
¢þ
>WENV183780948
PPYF01188545
[PPYF] human gut metagenome; stool from patient with Crohn's disease
11520
11595
+
Thr
GGT
[ENA]
¢þ
>WENV170700138
LIDZ01003260
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
467
392
-
Thr
GGT
[ENA]
¢þ
>C181176721
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1173883
1173958
+
Thr
GGT
-
¡û
>W09132827
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
724856
724781
-
Thr
GGT
[ENA]
¡û
>C191171156
CP039702
Bacillota
Clostridium butyricum [CP039702]
251099
251174
+
Thr
GGT
-
¡û
>C191171281
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2006171
2006246
+
Thr
GGT
-
¡û
>W1910004353
AUUU01000084
Bacillota
Clostridium sp. LS [AUUU]
24901
24976
+
Thr
GGT
[ENA]
¡û
>W1910637987
LRDH01000133
Bacillota
Clostridium butyricum 300064 [LRDH]
25957
26032
+
Thr
GGT
[ENA]
¡û
>W1911766198
QXDJ01000006
Bacillota
Clostridium chromiireducens C1 [QXDJ]
25447
25522
+
Thr
GGT
[ENA]
¡û
>W1810250534
PQCS01000046
Bacillota
Clostridium sp. 3-3 [PQCS]
159
84
-
Thr
GGT
[ENA]
¡û
>W1810805969
QRUG01000037
Bacillota
Clostridium butyricum AF25-25 [QRUG]
26109
26184
+
Thr
GGT
[ENA]
¡û
>W1511350213
JRMA01000010
Bacillota
Clostridium butyricum INCQS635 [JRMA]
30279
30354
+
Thr
GGT
[ENA]
¡û
>W1511501388
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3585759
3585684
-
Thr
GGT
[ENA]
¡û
>W1511554793
JZWE01000179
Bacillota
Clostridium sp. IBUN22A [JZWE]
26201
26276
+
Thr
GGT
[ENA]
¡û
>W1511554819
JZWF01000023
Bacillota
Clostridium sp. IBUN125C [JZWF]
403
328
-
Thr
GGT
[ENA]
¡û
>W1511554913
JZWG01000240
Bacillota
Clostridium sp. IBUN13A [JZWG]
256
181
-
Thr
GGT
[ENA]
¡û
>W1511554935
JZWH01000032
Bacillota
Clostridium sp. IBUN62F [JZWH]
26327
26402
+
Thr
GGT
[ENA]
¡û
>W11176277
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
433244
433319
+
Thr
GGT
[ENA]
¡û
>C161054122
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
504421
504496
+
Thr
GGT
-
¡û
>C161055875
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
192172
192247
+
Thr
GGT
-
¡û
>C161076399
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
176024
176099
+
Thr
GGT
-
¡û
>W1610020622
ASPQ01000085
Bacillota
Clostridium butyricum CWBI1009 [ASPQ]
163
88
-
Thr
GGT
[ENA]
¡û
>C131012910
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
175958
176033
+
Thr
GGT
[Ensembl]
¡û
>W1610627700
LIDW01000070
Bacillota
Clostridium butyricum [LIDW]
138
63
-
Thr
GGT
[ENA]
¡û
>W1710758827
LIDW01000070
Bacillota
Clostridium butyricum [LIDW]
138
63
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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