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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289747 (71 seq.)
>W1711326704
MBFW01000056
Gammaproteobacteria
Shewanella algae [MBFW]
124928
125003
+
His
GTG
[ENA]
¡û
>W1711340554
MCBT01000015
Gammaproteobacteria
Shewanella colwelliana [MCBT]
13870
13795
-
His
GTG
[ENA]
¡û
>W1711360884
MDKA01000030
Gammaproteobacteria
Shewanella algae [MDKA]
184123
184198
+
His
GTG
[ENA]
¡û
>W131045917
AMRX01000007
Gammaproteobacteria
Gayadomonas joobiniege G7 [AMRX]
301912
301837
-
His
GTG
[ENA]
¡û
>C022653
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
332103
332178
+
His
GTG
[Ensembl]
¡û
>C022716
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
2953196
2953121
-
His
GTG
[Ensembl]
¡û
>WENV180376709
OBOM01060268
[OBOM] marine metagenome; Seawater
481
408
-
His
GTG
[ENA]
¢þ
>WENV180833520
ODKC01073010
[ODKC] human metagenome; G_DNA_Supragingival plaque
234
159
-
His
GTG
[ENA]
¢þ
>WENV180986683
ODVK01000383
[ODVK] human metagenome; G_DNA_Supragingival plaque
25216
25291
+
His
GTG
[ENA]
¢þ
>WENV181107390
OEEI01006557
[OEEI] human metagenome; G_DNA_Supragingival plaque
3949
4024
+
His
GTG
[ENA]
¢þ
>WENV181158304
OEIH01000286
[OEIH] human metagenome; G_DNA_Supragingival plaque
132
57
-
His
GTG
[ENA]
¢þ
>WENV181158697
OEIH01006324
[OEIH] human metagenome; G_DNA_Supragingival plaque
132
57
-
His
GTG
[ENA]
¢þ
>WENV181180639
OEJU01000430
[OEJU] human metagenome; G_DNA_Supragingival plaque
24829
24904
+
His
GTG
[ENA]
¢þ
>WENV181567700
OGJJ01030663
[OGJJ] metagenome; Human gut stool
132
57
-
His
GTG
[ENA]
¢þ
>W141227801
BALL01000053
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
19033
19108
+
His
GTG
[ENA]
¡û
>W141227954
BALO01000010
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
14308
14233
-
His
GTG
[ENA]
¡û
>W141276194
JADP01000007
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
202969
203044
+
His
GTG
[ENA]
¡û
>W141276842
JAEC01000035
Gammaproteobacteria
Shewanella colwelliana ATCC 39565 [JAEC]
29659
29734
+
His
GTG
[ENA]
¡û
>W141277045
JAEH01000008
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
143727
143802
+
His
GTG
[ENA]
¡û
>W141277062
JAEH01000030
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
13838
13763
-
His
GTG
[ENA]
¡û
>WENV183509115
OMHG01005986
[OMHG] human oral metagenome; human oral
51
126
+
His
GTG
[ENA]
¢þ
>WENV170345385
CETF01000677
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1662
1587
-
His
GTG
[ENA]
¢þ
>WENV170386831
CETY01197625
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
18174
18249
+
His
GTG
[ENA]
¢þ
>WENV170655323
JTFN01021195
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1048
973
-
His
GTG
[ENA]
¢þ
>WENV170656147
JTFO01000972
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1550
1625
+
His
GTG
[ENA]
¢þ
>WENV170888852
MDTC01265217
[MDTC] marine metagenome; seawater
17855
17780
-
His
GTG
[ENA]
¢þ
>C181059199
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
1733425
1733350
-
His
GTG
-
¡û
>C181061283
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
305282
305357
+
His
GTG
-
¡û
>C181061304
CP022272
Gammaproteobacteria
Shewanella marisflavi EP1 [CP022272]
1538664
1538739
+
His
GTG
-
¡û
>C191015565
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
1166423
1166348
-
His
GTG
-
¡û
>C191107838
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
4822228
4822153
-
His
GTG
-
¡û
>C191155870
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
534533
534608
+
His
GTG
-
¡û
>C191160544
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
2019154
2019229
+
His
GTG
-
¡û
>C191160555
CP038493
Gammaproteobacteria
Thalassotalea sp. HSM 43 [CP038493]
2934020
2934095
+
His
GTG
-
¡û
>C191187168
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
289854
289929
+
His
GTG
-
¡û
>C191187189
CP041153
Gammaproteobacteria
Shewanella marisflavi ECSMB14101 [CP041153]
1482137
1482212
+
His
GTG
-
¡û
>W09104449
AALS01000001
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
272690
272615
-
His
GTG
[ENA]
¡û
>W141802134
JPER01000001
Gammaproteobacteria
Pseudidiomarina salinarum [JPER]
408660
408735
+
His
GTG
[ENA]
¡û
>W1910617492
LIRM01000077
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
566
491
-
His
GTG
[ENA]
¡û
>W1910645023
LVCY01000019
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
79012
79087
+
His
GTG
[ENA]
¡û
>W1910645141
LVDH01000016
Gammaproteobacteria
Shewanella algae AC [LVDH]
12458
12383
-
His
GTG
[ENA]
¡û
>W1910645181
LVDK01000003
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
14461
14386
-
His
GTG
[ENA]
¡û
>W1910645298
LVDU01000010
Gammaproteobacteria
Shewanella algae YHL [LVDU]
14535
14460
-
His
GTG
[ENA]
¡û
>W1910905548
NGVS01000014
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
369201
369276
+
His
GTG
[ENA]
¡û
>W1910927078
NIJK01000037
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
24714
24789
+
His
GTG
[ENA]
¡û
>W1910927207
NIJL01000036
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
436333
436408
+
His
GTG
[ENA]
¡û
>W1910927267
NIJM01000054
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
28127
28202
+
His
GTG
[ENA]
¡û
>W1911198617
NRCP01000013
Gammaproteobacteria
Aggregatibacter kilianii PN_516 [NRCP]
63593
63668
+
His
GTG
[ENA]
¡û
>W1911551694
OXJV01000022
Gammaproteobacteria
Shewanella algidipiscicola [OXJV]
112422
112497
+
His
GTG
[ENA]
¡û
>W1911585481
PIPY01000005
Gammaproteobacteria
Pseudidiomarina insulisalsae CVS-6 [PIPY]
202798
202873
+
His
GTG
[ENA]
¡û
>W1911585654
PIQB01000001
Gammaproteobacteria
Pseudidiomarina planktonica TS-T11 [PIQB]
935798
935723
-
His
GTG
[ENA]
¡û
>W1911585749
PIQD01000001
Gammaproteobacteria
Pseudidiomarina salinarum ISL-52 [PIQD]
961231
961156
-
His
GTG
[ENA]
¡û
>W1911585929
PIQH01000004
Gammaproteobacteria
Idiomarina tyrosinivorans CC-PW-9 [PIQH]
13408
13483
+
His
GTG
[ENA]
¡û
>W1911710068
QPQT01000014
Gammaproteobacteria
Shewanella algidipiscicola LMG 23746 [QPQT]
14488
14413
-
His
GTG
[ENA]
¡û
>W1911812326
QZEI01000023
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
11719
11794
+
His
GTG
[ENA]
¡û
>W1810578601
QEPU01000010
Gammaproteobacteria
Aggregatibacter aphrophilus C2008000870 [QEPU]
313
238
-
His
GTG
[ENA]
¡û
>W1810585827
QFDC01000001
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
271970
271895
-
His
GTG
[ENA]
¡û
>W1810609088
QGTT01000001
Gammaproteobacteria
Pseudidiomarina maritima 125B1 [QGTT]
184069
183994
-
His
GTG
[ENA]
¡û
>W1810671702
QJSY01000035
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
28167
28242
+
His
GTG
[ENA]
¡û
>W1810721833
QNSG01000001
Gammaproteobacteria
Pseudidiomarina tainanensis 125Bg [QNSG]
131082
131157
+
His
GTG
[ENA]
¡û
>W1810758887
QPJA01000001
Gammaproteobacteria
Pseudidiomarina tainanensis 86_o [QPJA]
131110
131185
+
His
GTG
[ENA]
¡û
>W1510077746
CDQH01000025
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
48288
48213
-
His
GTG
[ENA]
¡û
>W1511302131
JPII01000017
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
323406
323481
+
His
GTG
[ENA]
¡û
>W1511302189
JPII01000056
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
41085
41160
+
His
GTG
[ENA]
¡û
>W1511306508
JPMA01000006
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
58226
58151
-
His
GTG
[ENA]
¡û
>W1511366758
JSFF01000001
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
484732
484807
+
His
GTG
[ENA]
¡û
>W1511366822
JSFF01000029
Gammaproteobacteria
Shewanella sp. ECSMB14101 [JSFF]
13125
13050
-
His
GTG
[ENA]
¡û
>W1511477960
JWGX01000045
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
47636
47711
+
His
GTG
[ENA]
¡û
>W1610042078
BAXN01000005
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
212591
212666
+
His
GTG
[ENA]
¡û
>W1710039172
BAXN01000005
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
212591
212666
+
His
GTG
[ENA]
¡û
>W1710609240
FXWH01000001
Gammaproteobacteria
Pseudidiomarina planktonica [FXWH]
898076
898151
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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